Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0672 and PP_0673 are separated by 221 nucleotides PP_0673 and PP_0674 are separated by 304 nucleotides
PP_0672: PP_0672 - Sensory box protein, at 782,095 to 785,925
_0672
PP_0673: PP_0673 - conserved protein of unknown function, at 786,147 to 786,578
_0673
PP_0674: PP_0674 - ADP/ATP ratio sensor and inhibitor of translation, at 786,883 to 788,550
_0674
Position (kb) 786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 785.213 kb on - strand, within PP_0672 at 785.213 kb on - strand, within PP_0672 at 785.375 kb on + strand, within PP_0672 at 785.376 kb on - strand, within PP_0672 at 785.378 kb on + strand, within PP_0672 at 785.378 kb on + strand, within PP_0672 at 785.379 kb on - strand, within PP_0672 at 785.379 kb on - strand, within PP_0672 at 785.412 kb on + strand, within PP_0672 at 785.444 kb on + strand, within PP_0672 at 785.445 kb on - strand, within PP_0672 at 785.445 kb on - strand, within PP_0672 at 785.445 kb on - strand, within PP_0672 at 785.445 kb on - strand, within PP_0672 at 785.445 kb on - strand, within PP_0672 at 785.558 kb on - strand at 785.913 kb on + strand at 785.913 kb on + strand at 785.913 kb on + strand at 785.913 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.015 kb on + strand at 786.016 kb on - strand at 786.016 kb on - strand at 786.016 kb on - strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.017 kb on + strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.018 kb on - strand at 786.042 kb on - strand at 786.042 kb on - strand at 786.056 kb on + strand at 786.262 kb on + strand, within PP_0673 at 786.263 kb on - strand, within PP_0673 at 786.263 kb on - strand, within PP_0673 at 786.754 kb on + strand at 786.754 kb on + strand at 786.754 kb on + strand at 786.754 kb on + strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.809 kb on - strand at 786.857 kb on + strand at 786.857 kb on + strand at 786.858 kb on - strand at 786.858 kb on - strand at 786.858 kb on - strand at 786.861 kb on + strand at 786.862 kb on - strand at 786.869 kb on + strand at 786.892 kb on + strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.893 kb on - strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.898 kb on + strand at 786.899 kb on - strand at 786.899 kb on - strand at 786.993 kb on - strand at 787.099 kb on + strand, within PP_0674 at 787.100 kb on - strand, within PP_0674 at 787.169 kb on + strand, within PP_0674 at 787.204 kb on + strand, within PP_0674 at 787.204 kb on + strand, within PP_0674 at 787.205 kb on - strand, within PP_0674 at 787.214 kb on - strand, within PP_0674 at 787.540 kb on + strand, within PP_0674 at 787.540 kb on + strand, within PP_0674 at 787.541 kb on - strand, within PP_0674
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 785,213 - PP_0672 0.81 +0.5 785,213 - PP_0672 0.81 +0.8 785,375 + PP_0672 0.86 -0.6 785,376 - PP_0672 0.86 +0.5 785,378 + PP_0672 0.86 -0.3 785,378 + PP_0672 0.86 -1.0 785,379 - PP_0672 0.86 -0.0 785,379 - PP_0672 0.86 -1.1 785,412 + PP_0672 0.87 -1.8 785,444 + PP_0672 0.87 +0.3 785,445 - PP_0672 0.87 -0.1 785,445 - PP_0672 0.87 -1.7 785,445 - PP_0672 0.87 -0.6 785,445 - PP_0672 0.87 +0.3 785,445 - PP_0672 0.87 +1.1 785,558 - +0.4 785,913 + -2.9 785,913 + -0.4 785,913 + -1.1 785,913 + +0.7 786,015 + -1.3 786,015 + +0.1 786,015 + -0.6 786,015 + -0.1 786,016 - -0.3 786,016 - -1.0 786,016 - -1.0 786,017 + -1.0 786,017 + -0.7 786,017 + -0.2 786,017 + -1.1 786,018 - -1.2 786,018 - +0.6 786,018 - -0.3 786,018 - -1.4 786,018 - -0.9 786,042 - -0.3 786,042 - -1.1 786,056 + +0.7 786,262 + PP_0673 0.27 -0.1 786,263 - PP_0673 0.27 +0.6 786,263 - PP_0673 0.27 +1.1 786,754 + -0.9 786,754 + -0.5 786,754 + +1.3 786,754 + -0.1 786,755 - +3.4 786,755 - +0.0 786,755 - +1.4 786,755 - -0.3 786,809 - +0.8 786,857 + -0.2 786,857 + +0.1 786,858 - +1.3 786,858 - +0.0 786,858 - +0.6 786,861 + -0.7 786,862 - -1.2 786,869 + +0.1 786,892 + +1.2 786,893 - -0.8 786,893 - +1.5 786,893 - +0.1 786,893 - +0.1 786,893 - +0.4 786,898 + -0.4 786,898 + +0.7 786,898 + -0.4 786,898 + -0.3 786,899 - +0.2 786,899 - +0.1 786,993 - -0.9 787,099 + PP_0674 0.13 +0.1 787,100 - PP_0674 0.13 -0.6 787,169 + PP_0674 0.17 +0.6 787,204 + PP_0674 0.19 -0.2 787,204 + PP_0674 0.19 -1.5 787,205 - PP_0674 0.19 +0.4 787,214 - PP_0674 0.20 +1.0 787,540 + PP_0674 0.39 +0.2 787,540 + PP_0674 0.39 +0.5 787,541 - PP_0674 0.39 +2.1
Or see this region's nucleotide sequence