Strain Fitness in Pseudomonas putida KT2440 around PP_0422

Experiment: 1-Pentanol 0.3 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0421 and PP_0422 overlap by 4 nucleotidesPP_0422 and PP_0423 are separated by 147 nucleotidesPP_0423 and PP_0424 overlap by 4 nucleotides PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030 _0421 PP_0422: PP_0422 - Indole-3-glycerol phosphate synthase, at 511,027 to 511,860 _0422 PP_0423: PP_0423 - conserved protein of unknown function, at 512,008 to 512,712 _0423 PP_0424: PP_0424 - DNA-binding transcriptional dual regulator, at 512,709 to 513,353 _0424 Position (kb) 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1at 510.032 kb on - strandat 510.093 kb on + strand, within PP_0421at 510.093 kb on + strand, within PP_0421at 510.316 kb on + strand, within PP_0421at 510.374 kb on + strand, within PP_0421at 510.374 kb on - strand, within PP_0421at 510.514 kb on + strand, within PP_0421at 510.514 kb on + strand, within PP_0421at 510.515 kb on - strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.530 kb on - strand, within PP_0421at 510.722 kb on + strand, within PP_0421at 510.723 kb on - strand, within PP_0421at 510.874 kb on + strand, within PP_0421at 510.875 kb on - strand, within PP_0421at 510.875 kb on - strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.894 kb on - strand, within PP_0421at 510.930 kb on + strandat 510.931 kb on - strandat 510.948 kb on + strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.998 kb on - strandat 510.998 kb on - strandat 510.998 kb on - strandat 511.005 kb on + strandat 511.005 kb on + strandat 511.006 kb on - strandat 511.279 kb on + strand, within PP_0422at 511.279 kb on + strand, within PP_0422at 511.327 kb on + strand, within PP_0422at 511.348 kb on + strand, within PP_0422at 511.349 kb on - strand, within PP_0422at 511.349 kb on - strand, within PP_0422at 511.587 kb on + strand, within PP_0422at 511.587 kb on + strand, within PP_0422at 511.705 kb on - strand, within PP_0422at 511.902 kb on - strandat 511.931 kb on + strandat 511.931 kb on + strandat 511.997 kb on + strandat 511.997 kb on + strandat 511.997 kb on + strandat 511.998 kb on - strandat 511.998 kb on - strandat 512.425 kb on + strand, within PP_0423at 512.645 kb on + strandat 512.677 kb on + strandat 512.687 kb on + strandat 512.687 kb on + strandat 512.688 kb on - strandat 512.688 kb on - strandat 512.688 kb on - strandat 512.710 kb on + strandat 512.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol%
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510,032 - +0.4
510,093 + PP_0421 0.11 +1.4
510,093 + PP_0421 0.11 +0.2
510,316 + PP_0421 0.32 +0.3
510,374 + PP_0421 0.37 +1.0
510,374 - PP_0421 0.37 -0.1
510,514 + PP_0421 0.51 -0.7
510,514 + PP_0421 0.51 -0.1
510,515 - PP_0421 0.51 -0.4
510,529 + PP_0421 0.52 -2.2
510,529 + PP_0421 0.52 +0.2
510,529 + PP_0421 0.52 -0.0
510,530 - PP_0421 0.52 +0.6
510,722 + PP_0421 0.71 -0.3
510,723 - PP_0421 0.71 +0.9
510,874 + PP_0421 0.85 +0.4
510,875 - PP_0421 0.85 +1.2
510,875 - PP_0421 0.85 -1.0
510,893 + PP_0421 0.87 -0.2
510,893 + PP_0421 0.87 -0.4
510,893 + PP_0421 0.87 +0.2
510,893 + PP_0421 0.87 +0.1
510,893 + PP_0421 0.87 -0.5
510,894 - PP_0421 0.87 -2.1
510,930 + -0.3
510,931 - +0.6
510,948 + +0.1
510,949 - -2.5
510,949 - -0.1
510,949 - +0.1
510,949 - +0.6
510,949 - -0.5
510,998 - +0.5
510,998 - -0.0
510,998 - -0.7
511,005 + +0.7
511,005 + -0.4
511,006 - +0.8
511,279 + PP_0422 0.30 -1.5
511,279 + PP_0422 0.30 +1.0
511,327 + PP_0422 0.36 +0.2
511,348 + PP_0422 0.38 +0.8
511,349 - PP_0422 0.39 +0.0
511,349 - PP_0422 0.39 +1.3
511,587 + PP_0422 0.67 -0.3
511,587 + PP_0422 0.67 +0.6
511,705 - PP_0422 0.81 +0.9
511,902 - -1.2
511,931 + +1.0
511,931 + +1.0
511,997 + -0.1
511,997 + +0.0
511,997 + +0.9
511,998 - -0.1
511,998 - +0.5
512,425 + PP_0423 0.59 +0.3
512,645 + +1.0
512,677 + -0.7
512,687 + +0.5
512,687 + +0.0
512,688 - +0.7
512,688 - -2.4
512,688 - -2.9
512,710 + +0.6
512,711 - -1.4

Or see this region's nucleotide sequence