Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0218 and PP_0219 are separated by 28 nucleotides PP_0219 and PP_0220 overlap by 11 nucleotides PP_0220 and PP_0221 are separated by 1 nucleotides PP_0221 and PP_0222 overlap by 8 nucleotides
PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995
_0218
PP_0219: PP_0219 - L,D-methionine D-methionine ABC transporter - permease subunit, at 272,024 to 272,668
_0219
PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767
_0220
PP_0221: PP_0221 - methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein), at 273,769 to 274,569
_0221
PP_0222: PP_0222 - Monooxygenase, DszA family, at 274,562 to 275,947
_0222
Position (kb) 272
273
274 Strain fitness (log2 ratio) -1
0
1
2 at 271.857 kb on + strand at 271.948 kb on + strand at 272.082 kb on - strand at 272.136 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.582 kb on + strand, within PP_0219 at 272.582 kb on + strand, within PP_0219 at 272.583 kb on - strand, within PP_0219 at 272.632 kb on + strand at 272.633 kb on - strand at 272.633 kb on - strand at 272.676 kb on + strand at 272.677 kb on - strand at 273.271 kb on + strand, within PP_0220 at 273.495 kb on + strand, within PP_0220 at 273.551 kb on + strand, within PP_0220 at 273.552 kb on - strand at 273.552 kb on - strand, within PP_0220 at 273.644 kb on - strand, within PP_0220 at 273.791 kb on + strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.792 kb on - strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.846 kb on - strand at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.914 kb on + strand, within PP_0221 at 273.915 kb on - strand, within PP_0221 at 273.915 kb on - strand, within PP_0221 at 273.954 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.983 kb on + strand, within PP_0221 at 273.984 kb on - strand, within PP_0221 at 274.103 kb on + strand, within PP_0221 at 274.104 kb on - strand, within PP_0221 at 274.337 kb on + strand, within PP_0221 at 274.337 kb on + strand, within PP_0221 at 274.476 kb on + strand, within PP_0221 at 274.597 kb on + strand at 274.684 kb on - strand at 274.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 271,857 + +0.2 271,948 + -1.6 272,082 - +0.3 272,136 + PP_0219 0.17 -0.5 272,221 + PP_0219 0.31 -0.0 272,221 + PP_0219 0.31 -0.3 272,221 + PP_0219 0.31 +0.2 272,267 + PP_0219 0.38 -0.5 272,267 + PP_0219 0.38 +0.4 272,267 + PP_0219 0.38 +0.9 272,267 + PP_0219 0.38 +1.1 272,267 + PP_0219 0.38 +0.8 272,267 + PP_0219 0.38 -0.2 272,267 + PP_0219 0.38 +0.1 272,267 + PP_0219 0.38 -1.0 272,268 - PP_0219 0.38 -1.6 272,268 - PP_0219 0.38 -0.1 272,268 - PP_0219 0.38 -0.7 272,418 + PP_0219 0.61 -0.4 272,418 + PP_0219 0.61 +0.5 272,418 + PP_0219 0.61 -0.4 272,418 + PP_0219 0.61 -0.8 272,418 + PP_0219 0.61 -0.7 272,418 + PP_0219 0.61 -0.4 272,419 - PP_0219 0.61 +0.0 272,419 - PP_0219 0.61 -0.4 272,419 - PP_0219 0.61 +0.5 272,419 - PP_0219 0.61 -1.1 272,582 + PP_0219 0.87 -0.2 272,582 + PP_0219 0.87 +0.1 272,583 - PP_0219 0.87 +0.4 272,632 + -0.2 272,633 - +1.1 272,633 - +0.3 272,676 + +0.6 272,677 - -0.6 273,271 + PP_0220 0.55 -0.7 273,495 + PP_0220 0.75 -1.1 273,551 + PP_0220 0.80 +0.2 273,552 - +1.6 273,552 - PP_0220 0.81 -0.5 273,644 - PP_0220 0.89 +0.2 273,791 + +1.4 273,792 - +0.1 273,792 - +0.4 273,792 - +0.2 273,792 - +0.0 273,845 + -1.7 273,845 + +0.4 273,845 + +2.0 273,845 + +1.1 273,845 + -0.0 273,846 - -1.5 273,846 - +0.1 273,846 - +1.2 273,846 - +0.3 273,846 - +0.8 273,846 - -0.4 273,914 + PP_0221 0.18 +0.3 273,914 + PP_0221 0.18 -1.4 273,914 + PP_0221 0.18 -0.1 273,914 + PP_0221 0.18 +0.0 273,914 + PP_0221 0.18 +0.7 273,915 - PP_0221 0.18 -0.9 273,915 - PP_0221 0.18 -0.5 273,954 + PP_0221 0.23 +0.6 273,983 + PP_0221 0.27 +1.4 273,983 + PP_0221 0.27 +0.7 273,983 + PP_0221 0.27 +0.5 273,984 - PP_0221 0.27 -1.2 274,103 + PP_0221 0.42 -1.0 274,104 - PP_0221 0.42 +0.4 274,337 + PP_0221 0.71 -0.2 274,337 + PP_0221 0.71 +0.3 274,476 + PP_0221 0.88 +0.1 274,597 + +0.2 274,684 - -0.1 274,696 - +0.6
Or see this region's nucleotide sequence