Strain Fitness in Pseudomonas putida KT2440 around PP_0116

Experiment: 1-Pentanol 0.3 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-Pentanol 0.3 vol%
121,324	+		PP_0115	0.59	+0.1
121,324	+		PP_0115	0.59	-0.6
121,325	-		PP_0115	0.59	-1.2
121,399	+		PP_0115	0.63	+1.1
121,399	+		PP_0115	0.63	+0.0
121,400	-		PP_0115	0.63	-0.3
121,400	-		PP_0115	0.63	+0.1
121,411	-		PP_0115	0.63	+0.4
121,485	+		PP_0115	0.67	-0.9
121,485	+		PP_0115	0.67	-0.1
121,486	-		PP_0115	0.67	-0.4
121,486	-		PP_0115	0.67	-0.1
121,525	+		PP_0115	0.69	-0.7
121,525	+		PP_0115	0.69	-2.1
121,525	+		PP_0115	0.69	-0.5
121,525	+		PP_0115	0.69	-0.0
121,525	+		PP_0115	0.69	-0.4
121,526	-		PP_0115	0.69	+0.4
121,526	-		PP_0115	0.69	-2.1
121,561	-		PP_0115	0.71	-0.5
121,561	-		PP_0115	0.71	+0.9
121,962	+		PP_0115	0.89	-0.5
121,962	+		PP_0115	0.89	+0.7
121,963	-		PP_0115	0.89	+1.3
122,014	+				-0.1
122,014	+				-0.5
122,014	+				+0.9
122,015	-				+0.1
122,015	-				+0.1
122,015	-				-1.8
122,015	-				+0.5
122,015	-				-1.0
122,225	+				-2.0
122,225	+				+0.7
122,225	+				-1.1
122,237	+				+0.4
122,252	+				-0.5
122,253	-				-2.1
122,404	+		PP_0116	0.22	+0.0
122,421	-		PP_0116	0.24	+0.2
122,421	-		PP_0116	0.24	+1.0
122,499	+		PP_0116	0.35	-1.6
122,500	-		PP_0116	0.35	-0.3
122,707	-		PP_0116	0.64	+1.3
122,707	-		PP_0116	0.64	-0.1
122,717	+		PP_0116	0.66	+0.0
122,718	-		PP_0116	0.66	+0.4
122,718	-		PP_0116	0.66	+0.3
122,718	-		PP_0116	0.66	-0.3
122,741	+		PP_0116	0.69	-0.3
122,741	+		PP_0116	0.69	+1.1
122,973	-				+1.0
122,997	+				-1.1
122,998	-				+0.9
122,998	-				-0.9
123,030	+				-0.1
123,030	+				+1.2
123,031	-				-0.6
123,118	+				-1.5
123,118	+				+0.9
123,119	-				+0.0
123,119	-				-1.0
123,291	+		PP_0117	0.26	-0.6
123,292	-		PP_0117	0.26	+1.1
123,331	+		PP_0117	0.31	+0.7
123,331	+		PP_0117	0.31	+0.2
123,527	+		PP_0117	0.56	+0.4
123,527	+		PP_0117	0.56	+1.2
123,527	+		PP_0117	0.56	+0.3
123,527	+		PP_0117	0.56	+0.4
123,527	+		PP_0117	0.56	+0.7
123,528	-		PP_0117	0.57	+0.6
123,528	-		PP_0117	0.57	+0.1
123,788	-		PP_0117	0.90	+0.4
123,788	-		PP_0117	0.90	-2.1
123,951	+		PP_0118	0.12	+1.3
123,951	+		PP_0118	0.12	+0.5
123,951	+		PP_0118	0.12	+1.2
123,951	+		PP_0118	0.12	+0.9
123,952	-		PP_0118	0.12	-0.2
123,952	-		PP_0118	0.12	+0.4
123,952	-		PP_0118	0.12	-1.5
123,952	-		PP_0118	0.12	+0.7
123,952	-		PP_0118	0.12	+0.2