Experiment: 1-Pentanol 0.3 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0018 and PP_0019 overlap by 19 nucleotides PP_0019 and PP_0020 overlap by 4 nucleotides PP_0020 and PP_0021 are separated by 310 nucleotides
PP_0018: PP_0018 - conserved hypothetical protein, at 23,176 to 24,018
_0018
PP_0019: PP_0019 - hypothetical protein, at 24,000 to 24,698
_0019
PP_0020: PP_0020 - hypothetical protein, at 24,695 to 25,570
_0020
PP_0021: PP_0021 - conserved hypothetical protein, at 25,881 to 26,804
_0021
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.668 kb on - strand at 24.701 kb on - strand at 24.701 kb on - strand at 24.709 kb on + strand at 24.710 kb on - strand at 24.710 kb on - strand at 24.729 kb on + strand at 24.729 kb on + strand at 24.729 kb on + strand at 24.729 kb on + strand at 24.729 kb on + strand at 24.730 kb on - strand at 24.730 kb on - strand at 24.730 kb on - strand at 24.730 kb on - strand at 24.730 kb on - strand at 24.730 kb on - strand at 24.739 kb on + strand at 24.740 kb on - strand at 24.799 kb on - strand, within PP_0020 at 24.799 kb on - strand, within PP_0020 at 24.799 kb on - strand, within PP_0020 at 24.799 kb on - strand, within PP_0020 at 24.845 kb on + strand, within PP_0020 at 24.845 kb on + strand, within PP_0020 at 24.846 kb on - strand, within PP_0020 at 24.846 kb on - strand, within PP_0020 at 24.846 kb on - strand, within PP_0020 at 24.909 kb on + strand, within PP_0020 at 24.909 kb on + strand, within PP_0020 at 24.925 kb on + strand, within PP_0020 at 24.949 kb on + strand, within PP_0020 at 24.949 kb on + strand, within PP_0020 at 24.950 kb on - strand, within PP_0020 at 24.976 kb on + strand, within PP_0020 at 24.976 kb on + strand, within PP_0020 at 24.976 kb on + strand, within PP_0020 at 24.977 kb on - strand, within PP_0020 at 25.109 kb on + strand, within PP_0020 at 25.110 kb on - strand, within PP_0020 at 25.110 kb on - strand, within PP_0020 at 25.110 kb on - strand, within PP_0020 at 25.119 kb on - strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.136 kb on + strand, within PP_0020 at 25.137 kb on - strand, within PP_0020 at 25.137 kb on - strand, within PP_0020 at 25.137 kb on - strand, within PP_0020 at 25.145 kb on - strand, within PP_0020 at 25.145 kb on - strand, within PP_0020 at 25.317 kb on - strand, within PP_0020 at 25.431 kb on - strand, within PP_0020 at 25.431 kb on - strand, within PP_0020 at 25.431 kb on - strand, within PP_0020 at 25.468 kb on + strand, within PP_0020 at 25.468 kb on + strand, within PP_0020 at 25.469 kb on - strand, within PP_0020 at 25.469 kb on - strand, within PP_0020 at 25.469 kb on - strand, within PP_0020 at 25.469 kb on - strand, within PP_0020 at 25.499 kb on + strand at 25.499 kb on + strand at 25.499 kb on + strand at 25.500 kb on - strand at 25.500 kb on - strand at 25.576 kb on + strand at 25.592 kb on - strand at 25.610 kb on + strand at 25.610 kb on + strand at 25.610 kb on + strand at 25.611 kb on - strand at 25.611 kb on - strand at 25.611 kb on - strand at 25.611 kb on - strand at 25.627 kb on + strand at 25.627 kb on + strand at 25.677 kb on + strand at 25.677 kb on + strand at 25.678 kb on - strand at 25.711 kb on - strand at 25.711 kb on - strand at 25.728 kb on + strand at 25.728 kb on + strand at 25.728 kb on + strand at 25.728 kb on + strand at 25.729 kb on - strand at 25.729 kb on - strand at 25.729 kb on - strand at 25.729 kb on - strand at 25.729 kb on - strand at 25.738 kb on + strand at 25.812 kb on + strand at 25.812 kb on + strand at 25.813 kb on - strand at 25.813 kb on - strand at 25.818 kb on + strand at 25.818 kb on + strand at 25.818 kb on + strand at 25.819 kb on - strand at 25.828 kb on + strand at 25.841 kb on + strand at 25.842 kb on - strand at 25.859 kb on + strand at 25.859 kb on + strand at 25.859 kb on + strand at 25.860 kb on - strand at 25.865 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.890 kb on + strand at 25.891 kb on - strand at 25.891 kb on - strand at 25.891 kb on - strand at 25.892 kb on + strand at 25.892 kb on + strand at 25.892 kb on + strand at 25.893 kb on - strand at 25.999 kb on + strand, within PP_0021 at 25.999 kb on + strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.015 kb on - strand, within PP_0021 at 26.015 kb on - strand, within PP_0021 at 26.056 kb on - strand, within PP_0021 at 26.062 kb on + strand, within PP_0021 at 26.062 kb on + strand, within PP_0021 at 26.063 kb on - strand, within PP_0021 at 26.063 kb on - strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.132 kb on + strand, within PP_0021 at 26.132 kb on + strand, within PP_0021 at 26.158 kb on - strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.234 kb on - strand, within PP_0021 at 26.234 kb on - strand, within PP_0021 at 26.262 kb on + strand, within PP_0021 at 26.263 kb on - strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.346 kb on + strand, within PP_0021 at 26.346 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.353 kb on - strand, within PP_0021 at 26.353 kb on - strand, within PP_0021 at 26.355 kb on - strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.460 kb on - strand, within PP_0021 at 26.517 kb on + strand, within PP_0021 at 26.542 kb on - strand, within PP_0021
Per-strain Table
Position Strand Gene LocusTag Fraction 1-Pentanol 0.3 vol% remove 24,668 - -0.4 24,701 - +1.1 24,701 - -0.4 24,709 + -1.0 24,710 - +0.0 24,710 - -0.1 24,729 + +0.4 24,729 + +0.0 24,729 + -1.0 24,729 + +1.0 24,729 + +0.9 24,730 - +0.6 24,730 - +0.6 24,730 - +0.4 24,730 - +1.0 24,730 - -0.2 24,730 - +0.2 24,739 + +0.7 24,740 - +0.3 24,799 - PP_0020 0.12 +0.3 24,799 - PP_0020 0.12 +0.4 24,799 - PP_0020 0.12 +1.0 24,799 - PP_0020 0.12 +1.1 24,845 + PP_0020 0.17 +0.5 24,845 + PP_0020 0.17 +0.8 24,846 - PP_0020 0.17 +0.6 24,846 - PP_0020 0.17 +0.7 24,846 - PP_0020 0.17 -0.5 24,909 + PP_0020 0.24 -0.4 24,909 + PP_0020 0.24 -0.6 24,925 + PP_0020 0.26 +2.0 24,949 + PP_0020 0.29 -0.6 24,949 + PP_0020 0.29 -1.1 24,950 - PP_0020 0.29 +0.1 24,976 + PP_0020 0.32 -0.3 24,976 + PP_0020 0.32 +1.3 24,976 + PP_0020 0.32 -0.8 24,977 - PP_0020 0.32 -1.0 25,109 + PP_0020 0.47 -1.1 25,110 - PP_0020 0.47 +0.5 25,110 - PP_0020 0.47 -0.7 25,110 - PP_0020 0.47 +0.2 25,119 - PP_0020 0.48 +0.4 25,136 + PP_0020 0.50 +0.4 25,136 + PP_0020 0.50 +0.6 25,136 + PP_0020 0.50 +2.4 25,136 + PP_0020 0.50 +0.7 25,136 + PP_0020 0.50 +0.4 25,136 + PP_0020 0.50 -0.1 25,137 - PP_0020 0.50 -0.1 25,137 - PP_0020 0.50 +2.0 25,137 - PP_0020 0.50 -2.5 25,145 - PP_0020 0.51 -0.3 25,145 - PP_0020 0.51 -0.7 25,317 - PP_0020 0.71 +0.3 25,431 - PP_0020 0.84 +0.7 25,431 - PP_0020 0.84 -0.2 25,431 - PP_0020 0.84 +0.0 25,468 + PP_0020 0.88 +0.1 25,468 + PP_0020 0.88 -0.3 25,469 - PP_0020 0.88 -0.4 25,469 - PP_0020 0.88 -0.0 25,469 - PP_0020 0.88 +0.0 25,469 - PP_0020 0.88 -0.5 25,499 + -0.3 25,499 + -0.3 25,499 + +1.2 25,500 - -0.2 25,500 - +0.6 25,576 + -1.1 25,592 - -0.5 25,610 + -2.9 25,610 + +1.2 25,610 + -0.4 25,611 - -0.1 25,611 - -0.2 25,611 - -0.2 25,611 - +1.7 25,627 + +0.2 25,627 + +0.6 25,677 + +0.7 25,677 + -1.7 25,678 - -0.3 25,711 - +0.5 25,711 - +0.4 25,728 + +0.0 25,728 + +0.8 25,728 + +0.8 25,728 + -0.2 25,729 - +0.2 25,729 - -0.2 25,729 - +0.1 25,729 - -0.5 25,729 - -0.5 25,738 + +0.9 25,812 + +1.0 25,812 + +0.1 25,813 - -0.2 25,813 - +0.3 25,818 + -1.6 25,818 + +0.6 25,818 + -0.9 25,819 - -0.1 25,828 + -0.3 25,841 + -2.1 25,842 - +0.6 25,859 + +0.3 25,859 + +0.9 25,859 + -0.3 25,860 - -0.8 25,865 + +0.4 25,890 + +0.1 25,890 + -1.2 25,890 + +0.2 25,890 + +0.0 25,890 + -0.5 25,890 + -0.4 25,890 + -0.0 25,890 + -1.1 25,891 - -0.3 25,891 - +1.3 25,891 - -0.7 25,892 + +0.2 25,892 + +0.2 25,892 + +0.1 25,893 - -0.1 25,999 + PP_0021 0.13 +0.3 25,999 + PP_0021 0.13 +0.5 26,000 - PP_0021 0.13 +0.7 26,000 - PP_0021 0.13 +0.4 26,000 - PP_0021 0.13 -1.4 26,000 - PP_0021 0.13 +0.3 26,000 - PP_0021 0.13 +0.7 26,000 - PP_0021 0.13 +0.3 26,000 - PP_0021 0.13 -0.6 26,015 - PP_0021 0.15 +0.4 26,015 - PP_0021 0.15 -1.9 26,056 - PP_0021 0.19 +0.1 26,062 + PP_0021 0.20 +0.8 26,062 + PP_0021 0.20 +0.7 26,063 - PP_0021 0.20 -1.6 26,063 - PP_0021 0.20 +0.8 26,099 + PP_0021 0.24 +0.1 26,099 + PP_0021 0.24 -1.2 26,099 + PP_0021 0.24 +0.1 26,099 + PP_0021 0.24 +0.3 26,099 + PP_0021 0.24 +0.3 26,100 - PP_0021 0.24 -1.0 26,100 - PP_0021 0.24 -0.7 26,100 - PP_0021 0.24 -0.3 26,102 + PP_0021 0.24 -0.1 26,102 + PP_0021 0.24 +1.6 26,102 + PP_0021 0.24 -1.4 26,102 + PP_0021 0.24 +0.5 26,103 - PP_0021 0.24 -0.6 26,103 - PP_0021 0.24 +0.2 26,103 - PP_0021 0.24 +0.7 26,103 - PP_0021 0.24 +0.8 26,103 - PP_0021 0.24 -1.0 26,132 + PP_0021 0.27 -1.4 26,132 + PP_0021 0.27 -0.7 26,158 - PP_0021 0.30 +0.5 26,233 + PP_0021 0.38 +1.5 26,233 + PP_0021 0.38 +1.6 26,233 + PP_0021 0.38 +1.1 26,233 + PP_0021 0.38 +0.9 26,234 - PP_0021 0.38 +1.2 26,234 - PP_0021 0.38 +0.6 26,262 + PP_0021 0.41 +0.3 26,263 - PP_0021 0.41 +0.4 26,328 + PP_0021 0.48 -0.3 26,328 + PP_0021 0.48 +1.3 26,328 + PP_0021 0.48 +1.6 26,346 + PP_0021 0.50 -0.2 26,346 + PP_0021 0.50 +0.5 26,352 + PP_0021 0.51 +0.5 26,352 + PP_0021 0.51 +0.1 26,352 + PP_0021 0.51 +0.7 26,353 - PP_0021 0.51 -0.0 26,353 - PP_0021 0.51 +0.7 26,355 - PP_0021 0.51 +0.8 26,394 + PP_0021 0.56 -0.2 26,394 + PP_0021 0.56 +1.6 26,394 + PP_0021 0.56 +0.0 26,394 + PP_0021 0.56 -0.1 26,394 + PP_0021 0.56 +0.3 26,394 + PP_0021 0.56 +0.6 26,394 + PP_0021 0.56 +0.5 26,394 + PP_0021 0.56 +0.7 26,394 + PP_0021 0.56 +0.7 26,394 + PP_0021 0.56 -0.6 26,394 + PP_0021 0.56 -0.5 26,394 + PP_0021 0.56 +1.0 26,395 - PP_0021 0.56 -1.1 26,395 - PP_0021 0.56 +1.0 26,395 - PP_0021 0.56 +0.4 26,395 - +0.6 26,395 - PP_0021 0.56 -0.5 26,395 - PP_0021 0.56 +0.4 26,395 - PP_0021 0.56 +1.4 26,395 - PP_0021 0.56 +1.6 26,395 - PP_0021 0.56 +0.3 26,459 + PP_0021 0.63 +0.2 26,459 + PP_0021 0.63 +0.6 26,459 + PP_0021 0.63 +0.1 26,460 - PP_0021 0.63 -0.2 26,517 + PP_0021 0.69 +0.4 26,542 - PP_0021 0.72 +0.3
Or see this region's nucleotide sequence