Strain Fitness in Pseudomonas sp. RS175 around PFR28_02134

Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 2.5 mM
2,454,322	+		PFR28_02133	0.60	+0.0
2,454,323	-		PFR28_02133	0.60	+0.8
2,454,351	+		PFR28_02133	0.62	-1.0
2,454,351	+		PFR28_02133	0.62	-0.4
2,454,479	+		PFR28_02133	0.73	+0.8
2,454,480	-		PFR28_02133	0.73	-0.3
2,454,506	+		PFR28_02133	0.75	+0.2
2,454,506	+		PFR28_02133	0.75	+0.4
2,454,506	+		PFR28_02133	0.75	+0.6
2,454,507	-		PFR28_02133	0.75	+0.7
2,454,507	-		PFR28_02133	0.75	-0.4
2,454,507	-		PFR28_02133	0.75	-0.5
2,454,507	-		PFR28_02133	0.75	-0.8
2,454,507	-		PFR28_02133	0.75	-1.0
2,454,549	-		PFR28_02133	0.79	-1.8
2,454,599	+		PFR28_02133	0.83	-1.3
2,454,600	-		PFR28_02133	0.83	+0.9
2,454,614	+		PFR28_02133	0.84	+1.0
2,454,615	-		PFR28_02133	0.84	+2.5
2,454,615	-		PFR28_02133	0.84	+0.3
2,454,615	-		PFR28_02133	0.84	-3.1
2,454,615	-		PFR28_02133	0.84	-1.1
2,454,615	-		PFR28_02133	0.84	+0.8
2,454,737	+				-1.2
2,454,737	+				+0.4
2,454,737	+				-1.1
2,454,737	+				-0.6
2,454,737	+				+0.2
2,454,737	+				+2.0
2,454,738	-				-0.2
2,454,738	-				+0.9
2,454,902	-				+0.1
2,454,916	-				+0.0
2,454,975	+				-0.2
2,454,975	+				+0.5
2,454,975	+				+0.4
2,454,975	+				+0.5
2,454,975	+				-2.0
2,454,976	-				+0.3
2,454,976	-				-0.7
2,454,976	-				+2.4
2,454,976	-				+0.4
2,454,976	-				+0.4
2,454,976	-				-2.9
2,454,976	-				-1.9
2,454,976	-				+1.9
2,454,976	-				-0.9
2,454,976	-				+0.2
2,454,976	-				-0.8
2,454,997	-				+0.8
2,454,998	+				+1.1
2,454,998	+				-0.6
2,454,998	+				-0.1
2,454,998	+				+1.2
2,454,998	+				+0.4
2,454,998	+				-0.8
2,454,999	-				-2.0
2,454,999	-				-0.6
2,454,999	-				+1.5
2,454,999	-				-0.5
2,454,999	-				-0.3
2,454,999	-				-0.4
2,455,019	+				-1.0
2,455,020	-				-0.8
2,455,040	+				+1.1
2,455,041	-				-2.3
2,455,094	+				+0.5
2,455,094	+				-0.2
2,455,094	+				+0.5
2,455,094	+				-0.0
2,455,095	-				+0.7
2,455,095	-				+0.9
2,455,095	-				+0.1
2,455,287	+		PFR28_02134	0.30	+0.4
2,455,334	+		PFR28_02134	0.36	+0.6
2,455,335	-		PFR28_02134	0.36	+0.8
2,455,460	+		PFR28_02134	0.49	+0.8
2,455,460	+		PFR28_02134	0.49	-0.3
2,455,460	+		PFR28_02134	0.49	+1.0
2,455,520	+		PFR28_02134	0.56	-1.0
2,455,611	+		PFR28_02134	0.66	-0.7
2,455,612	-		PFR28_02134	0.66	+1.4
2,455,612	-		PFR28_02134	0.66	+2.6
2,455,612	-		PFR28_02134	0.66	-0.3
2,455,628	+		PFR28_02134	0.68	-1.2
2,455,629	-		PFR28_02134	0.68	+1.2
2,455,629	-		PFR28_02134	0.68	+1.8
2,455,769	+		PFR28_02134	0.83	-1.2
2,455,769	+		PFR28_02134	0.83	-0.9
2,455,769	+		PFR28_02134	0.83	+0.2
2,455,769	+		PFR28_02134	0.83	+0.3
2,455,769	+		PFR28_02134	0.83	-1.5
2,455,769	+		PFR28_02134	0.83	-1.1
2,455,769	+		PFR28_02134	0.83	-0.6
2,455,769	+		PFR28_02134	0.83	-0.8
2,455,770	-		PFR28_02134	0.83	-0.3
2,455,770	-		PFR28_02134	0.83	-2.0
2,455,770	-		PFR28_02134	0.83	-1.3
2,455,770	-		PFR28_02134	0.83	-0.6
2,455,770	-		PFR28_02134	0.83	-0.5
2,455,770	-		PFR28_02134	0.83	+0.3
2,455,770	-		PFR28_02134	0.83	-0.9
2,455,886	+				+0.8
2,456,142	-		PFR28_02135	0.16	+1.2
2,456,246	+		PFR28_02135	0.26	-0.2
2,456,327	+		PFR28_02135	0.34	+1.2
2,456,327	+		PFR28_02135	0.34	+0.4
2,456,468	+		PFR28_02135	0.47	-0.0
2,456,468	+		PFR28_02135	0.47	-1.7
2,456,468	+		PFR28_02135	0.47	+2.4
2,456,468	+		PFR28_02135	0.47	+0.7
2,456,468	+		PFR28_02135	0.47	-1.6
2,456,468	+		PFR28_02135	0.47	-0.4
2,456,468	+		PFR28_02135	0.47	+0.7
2,456,468	+		PFR28_02135	0.47	-1.1
2,456,468	+		PFR28_02135	0.47	-0.2
2,456,469	-		PFR28_02135	0.47	+0.0
2,456,469	-		PFR28_02135	0.47	+0.0
2,456,469	-		PFR28_02135	0.47	+0.7
2,456,469	-		PFR28_02135	0.47	+1.2
2,456,469	-		PFR28_02135	0.47	-1.0
2,456,469	-		PFR28_02135	0.47	+0.8
2,456,469	-		PFR28_02135	0.47	+0.5
2,456,519	+		PFR28_02135	0.52	+4.2
2,456,519	+		PFR28_02135	0.52	-0.7
2,456,519	+		PFR28_02135	0.52	+0.6
2,456,519	+		PFR28_02135	0.52	+1.7
2,456,519	+		PFR28_02135	0.52	+1.3
2,456,520	-		PFR28_02135	0.52	+1.2
2,456,520	-		PFR28_02135	0.52	-0.9
2,456,520	-		PFR28_02135	0.52	+1.2
2,456,520	-		PFR28_02135	0.52	-0.9
2,456,520	-		PFR28_02135	0.52	-0.7
2,456,520	-		PFR28_02135	0.52	+2.0
2,456,555	+		PFR28_02135	0.56	-3.5
2,456,619	-		PFR28_02135	0.62	+2.5
2,456,642	+		PFR28_02135	0.64	-1.2
2,456,642	+		PFR28_02135	0.64	-0.6
2,456,642	+		PFR28_02135	0.64	-0.2
2,456,642	+		PFR28_02135	0.64	-0.9
2,456,642	+		PFR28_02135	0.64	+0.0
2,456,642	+		PFR28_02135	0.64	+0.6
2,456,642	+		PFR28_02135	0.64	-1.6
2,456,642	+		PFR28_02135	0.64	+2.8
2,456,642	+		PFR28_02135	0.64	-0.4
2,456,642	+		PFR28_02135	0.64	-1.6
2,456,642	+		PFR28_02135	0.64	-0.4
2,456,642	+		PFR28_02135	0.64	+0.9
2,456,642	+		PFR28_02135	0.64	-3.5
2,456,642	+		PFR28_02135	0.64	-0.4
2,456,643	-		PFR28_02135	0.64	-0.9
2,456,643	-		PFR28_02135	0.64	+3.5
2,456,643	-		PFR28_02135	0.64	-0.4
2,456,643	-		PFR28_02135	0.64	+1.2
2,456,643	-		PFR28_02135	0.64	+1.2
2,456,643	-		PFR28_02135	0.64	+0.9
2,456,643	-		PFR28_02135	0.64	+0.3
2,456,643	-		PFR28_02135	0.64	+0.8
2,456,643	-		PFR28_02135	0.64	-0.8
2,456,643	-		PFR28_02135	0.64	-0.5
2,456,643	-		PFR28_02135	0.64	-0.5
2,456,643	-		PFR28_02135	0.64	-0.7
2,456,677	+		PFR28_02135	0.67	-0.2
2,456,681	+		PFR28_02135	0.68	+0.8
2,456,681	+		PFR28_02135	0.68	-0.8
2,456,681	+		PFR28_02135	0.68	+1.7
2,456,681	+		PFR28_02135	0.68	-0.7
2,456,681	+		PFR28_02135	0.68	-0.4
2,456,681	+		PFR28_02135	0.68	+0.7
2,456,682	-		PFR28_02135	0.68	+0.2
2,456,682	-		PFR28_02135	0.68	+0.8
2,456,682	-		PFR28_02135	0.68	-1.2
2,456,682	-		PFR28_02135	0.68	+2.2
2,456,682	-		PFR28_02135	0.68	+1.9
2,456,682	-		PFR28_02135	0.68	-0.3
2,456,682	-		PFR28_02135	0.68	-0.3
2,456,682	-		PFR28_02135	0.68	+0.8
2,456,682	-		PFR28_02135	0.68	+0.1
2,456,682	-		PFR28_02135	0.68	-0.3
2,456,834	+		PFR28_02135	0.83	+2.0
2,456,834	+		PFR28_02135	0.83	-3.2
2,456,834	+		PFR28_02135	0.83	+1.2
2,456,834	+		PFR28_02135	0.83	+0.1
2,456,835	-		PFR28_02135	0.83	+0.6
2,456,835	-		PFR28_02135	0.83	+1.3
2,456,885	+		PFR28_02135	0.87	-0.1
2,456,885	+		PFR28_02135	0.87	+0.3
2,456,886	-		PFR28_02135	0.88	+0.1