Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00896 and PFR28_00897 are separated by 46 nucleotides PFR28_00897 and PFR28_00898 are separated by 79 nucleotides PFR28_00898 and PFR28_00899 are separated by 361 nucleotides
PFR28_00896: PFR28_00896 - hypothetical protein, at 972,563 to 975,022
_00896
PFR28_00897: PFR28_00897 - hypothetical protein, at 975,069 to 975,860
_00897
PFR28_00898: PFR28_00898 - hypothetical protein, at 975,940 to 976,866
_00898
PFR28_00899: PFR28_00899 - putative oxidoreductase YciK, at 977,228 to 977,968
_00899
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 974.947 kb on + strand at 974.948 kb on - strand at 974.948 kb on - strand at 974.956 kb on + strand at 974.956 kb on + strand at 974.956 kb on + strand at 974.956 kb on + strand at 974.957 kb on - strand at 974.957 kb on - strand at 974.957 kb on - strand at 974.968 kb on + strand at 974.968 kb on + strand at 974.968 kb on + strand at 974.969 kb on - strand at 974.994 kb on + strand at 974.995 kb on - strand at 974.995 kb on - strand at 975.189 kb on + strand, within PFR28_00897 at 975.189 kb on + strand, within PFR28_00897 at 975.189 kb on + strand, within PFR28_00897 at 975.190 kb on - strand, within PFR28_00897 at 975.206 kb on + strand, within PFR28_00897 at 975.206 kb on + strand, within PFR28_00897 at 975.237 kb on + strand, within PFR28_00897 at 975.237 kb on + strand, within PFR28_00897 at 975.238 kb on - strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.279 kb on + strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.280 kb on - strand, within PFR28_00897 at 975.297 kb on - strand, within PFR28_00897 at 975.388 kb on - strand, within PFR28_00897 at 975.511 kb on + strand, within PFR28_00897 at 975.511 kb on + strand, within PFR28_00897 at 975.534 kb on + strand, within PFR28_00897 at 975.534 kb on + strand, within PFR28_00897 at 975.534 kb on + strand, within PFR28_00897 at 975.534 kb on + strand, within PFR28_00897 at 975.535 kb on - strand, within PFR28_00897 at 975.535 kb on - strand, within PFR28_00897 at 975.535 kb on - strand, within PFR28_00897 at 975.574 kb on + strand, within PFR28_00897 at 975.574 kb on + strand, within PFR28_00897 at 975.574 kb on + strand, within PFR28_00897 at 975.575 kb on - strand, within PFR28_00897 at 975.575 kb on - strand, within PFR28_00897 at 975.575 kb on - strand, within PFR28_00897 at 975.575 kb on - strand, within PFR28_00897 at 975.591 kb on + strand, within PFR28_00897 at 975.592 kb on - strand, within PFR28_00897 at 975.592 kb on - strand, within PFR28_00897 at 975.657 kb on + strand, within PFR28_00897 at 975.658 kb on - strand, within PFR28_00897 at 975.704 kb on - strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.765 kb on + strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.766 kb on - strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.771 kb on + strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.772 kb on - strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.777 kb on + strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.778 kb on - strand, within PFR28_00897 at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.986 kb on + strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 975.987 kb on - strand at 976.095 kb on - strand, within PFR28_00898 at 976.095 kb on - strand, within PFR28_00898 at 976.115 kb on + strand, within PFR28_00898 at 976.116 kb on - strand, within PFR28_00898 at 976.116 kb on - strand, within PFR28_00898 at 976.158 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.342 kb on - strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.584 kb on - strand, within PFR28_00898 at 976.842 kb on + strand at 976.842 kb on + strand at 976.842 kb on + strand at 976.843 kb on - strand at 976.843 kb on - strand at 976.873 kb on + strand at 976.874 kb on - strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.970 kb on + strand at 976.970 kb on + strand at 976.970 kb on + strand at 976.971 kb on - strand at 976.971 kb on - strand at 976.971 kb on - strand at 976.986 kb on + strand at 976.986 kb on + strand at 976.987 kb on - strand at 977.045 kb on - strand at 977.048 kb on + strand at 977.115 kb on + strand at 977.115 kb on + strand at 977.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 2.5 mM remove 974,947 + -1.1 974,948 - +0.5 974,948 - +0.6 974,956 + -0.8 974,956 + -2.3 974,956 + -1.2 974,956 + +1.1 974,957 - -1.0 974,957 - -1.5 974,957 - -0.9 974,968 + +0.3 974,968 + -0.3 974,968 + -0.2 974,969 - -1.4 974,994 + +0.7 974,995 - -0.5 974,995 - -0.3 975,189 + PFR28_00897 0.15 -0.5 975,189 + PFR28_00897 0.15 +1.0 975,189 + PFR28_00897 0.15 -0.3 975,190 - PFR28_00897 0.15 -1.4 975,206 + PFR28_00897 0.17 +0.7 975,206 + PFR28_00897 0.17 -0.0 975,237 + PFR28_00897 0.21 +1.6 975,237 + PFR28_00897 0.21 -0.6 975,238 - PFR28_00897 0.21 -0.5 975,279 + PFR28_00897 0.27 -0.4 975,279 + PFR28_00897 0.27 +0.1 975,279 + PFR28_00897 0.27 -0.0 975,279 + PFR28_00897 0.27 +0.4 975,279 + PFR28_00897 0.27 -0.7 975,279 + PFR28_00897 0.27 +1.4 975,279 + PFR28_00897 0.27 -0.2 975,279 + PFR28_00897 0.27 +1.1 975,279 + PFR28_00897 0.27 +0.0 975,279 + PFR28_00897 0.27 -1.0 975,279 + PFR28_00897 0.27 -1.0 975,280 - PFR28_00897 0.27 +2.3 975,280 - PFR28_00897 0.27 -0.5 975,280 - PFR28_00897 0.27 -0.6 975,280 - PFR28_00897 0.27 -0.4 975,280 - PFR28_00897 0.27 -0.4 975,280 - PFR28_00897 0.27 +0.5 975,280 - PFR28_00897 0.27 -0.0 975,280 - PFR28_00897 0.27 -1.8 975,280 - PFR28_00897 0.27 -1.8 975,280 - PFR28_00897 0.27 +1.4 975,280 - PFR28_00897 0.27 -1.0 975,280 - PFR28_00897 0.27 -0.9 975,297 - PFR28_00897 0.29 -0.3 975,388 - PFR28_00897 0.40 +1.2 975,511 + PFR28_00897 0.56 -0.6 975,511 + PFR28_00897 0.56 -0.9 975,534 + PFR28_00897 0.59 +0.9 975,534 + PFR28_00897 0.59 -0.9 975,534 + PFR28_00897 0.59 +0.1 975,534 + PFR28_00897 0.59 +0.5 975,535 - PFR28_00897 0.59 +1.4 975,535 - PFR28_00897 0.59 -2.2 975,535 - PFR28_00897 0.59 -0.1 975,574 + PFR28_00897 0.64 -0.2 975,574 + PFR28_00897 0.64 -0.5 975,574 + PFR28_00897 0.64 -0.9 975,575 - PFR28_00897 0.64 -0.4 975,575 - PFR28_00897 0.64 +0.1 975,575 - PFR28_00897 0.64 -1.4 975,575 - PFR28_00897 0.64 -2.7 975,591 + PFR28_00897 0.66 -0.9 975,592 - PFR28_00897 0.66 -1.0 975,592 - PFR28_00897 0.66 -1.0 975,657 + PFR28_00897 0.74 -2.8 975,658 - PFR28_00897 0.74 -2.1 975,704 - PFR28_00897 0.80 +0.2 975,765 + PFR28_00897 0.88 -1.3 975,765 + PFR28_00897 0.88 -1.0 975,765 + PFR28_00897 0.88 -0.5 975,765 + PFR28_00897 0.88 -0.6 975,765 + PFR28_00897 0.88 -2.7 975,765 + PFR28_00897 0.88 +1.0 975,765 + PFR28_00897 0.88 -0.0 975,765 + PFR28_00897 0.88 -1.4 975,765 + PFR28_00897 0.88 -0.6 975,765 + PFR28_00897 0.88 -1.2 975,766 - PFR28_00897 0.88 -2.0 975,766 - PFR28_00897 0.88 -0.2 975,766 - PFR28_00897 0.88 -1.3 975,766 - PFR28_00897 0.88 -1.8 975,766 - PFR28_00897 0.88 -0.3 975,766 - PFR28_00897 0.88 +0.8 975,766 - PFR28_00897 0.88 -0.6 975,766 - PFR28_00897 0.88 -0.1 975,766 - PFR28_00897 0.88 -0.5 975,766 - PFR28_00897 0.88 -0.9 975,766 - PFR28_00897 0.88 +0.0 975,766 - PFR28_00897 0.88 -1.8 975,766 - PFR28_00897 0.88 -3.0 975,766 - PFR28_00897 0.88 -2.4 975,766 - PFR28_00897 0.88 -0.9 975,766 - PFR28_00897 0.88 -0.1 975,766 - PFR28_00897 0.88 -0.5 975,766 - PFR28_00897 0.88 +0.6 975,771 + PFR28_00897 0.89 -2.0 975,771 + PFR28_00897 0.89 -1.4 975,771 + PFR28_00897 0.89 -1.1 975,771 + PFR28_00897 0.89 +0.1 975,771 + PFR28_00897 0.89 -1.2 975,771 + PFR28_00897 0.89 -0.5 975,771 + PFR28_00897 0.89 -1.0 975,771 + PFR28_00897 0.89 -1.0 975,771 + PFR28_00897 0.89 -1.7 975,771 + PFR28_00897 0.89 -0.7 975,772 - PFR28_00897 0.89 -0.2 975,772 - PFR28_00897 0.89 -0.2 975,772 - PFR28_00897 0.89 -0.1 975,772 - PFR28_00897 0.89 -0.1 975,772 - PFR28_00897 0.89 -1.4 975,772 - PFR28_00897 0.89 -2.0 975,772 - PFR28_00897 0.89 -1.2 975,772 - PFR28_00897 0.89 -0.6 975,772 - PFR28_00897 0.89 -0.0 975,772 - PFR28_00897 0.89 -0.3 975,772 - PFR28_00897 0.89 -0.9 975,772 - PFR28_00897 0.89 -1.6 975,777 + PFR28_00897 0.89 -0.8 975,777 + PFR28_00897 0.89 -0.3 975,777 + PFR28_00897 0.89 +0.6 975,777 + PFR28_00897 0.89 -0.5 975,777 + PFR28_00897 0.89 -2.0 975,777 + PFR28_00897 0.89 -1.0 975,777 + PFR28_00897 0.89 -1.3 975,777 + PFR28_00897 0.89 +0.5 975,777 + PFR28_00897 0.89 +0.1 975,777 + PFR28_00897 0.89 -1.0 975,777 + PFR28_00897 0.89 -0.6 975,777 + PFR28_00897 0.89 -0.4 975,777 + PFR28_00897 0.89 +1.1 975,777 + PFR28_00897 0.89 -0.9 975,777 + PFR28_00897 0.89 -0.3 975,777 + PFR28_00897 0.89 +0.4 975,777 + PFR28_00897 0.89 -0.9 975,777 + PFR28_00897 0.89 -0.8 975,778 - PFR28_00897 0.90 -0.5 975,778 - PFR28_00897 0.90 -1.1 975,778 - PFR28_00897 0.90 -0.2 975,778 - PFR28_00897 0.90 -2.2 975,778 - PFR28_00897 0.90 -1.3 975,778 - PFR28_00897 0.90 -1.3 975,778 - PFR28_00897 0.90 -1.8 975,778 - PFR28_00897 0.90 -0.6 975,778 - PFR28_00897 0.90 +0.2 975,778 - PFR28_00897 0.90 -0.6 975,778 - PFR28_00897 0.90 -1.0 975,778 - PFR28_00897 0.90 -0.2 975,778 - PFR28_00897 0.90 +0.2 975,778 - PFR28_00897 0.90 -0.6 975,778 - PFR28_00897 0.90 -3.2 975,778 - PFR28_00897 0.90 -1.0 975,778 - PFR28_00897 0.90 -0.1 975,778 - PFR28_00897 0.90 -1.9 975,778 - PFR28_00897 0.90 +0.2 975,778 - PFR28_00897 0.90 -1.7 975,778 - PFR28_00897 0.90 -0.3 975,986 + -0.1 975,986 + -2.9 975,986 + -2.0 975,986 + -0.6 975,986 + -0.5 975,986 + -1.5 975,986 + -0.6 975,986 + -0.7 975,986 + -0.6 975,986 + -1.1 975,986 + -0.2 975,986 + -0.5 975,986 + -1.4 975,987 - -1.9 975,987 - +0.4 975,987 - -1.9 975,987 - -1.2 975,987 - -0.2 975,987 - -2.2 975,987 - -1.9 975,987 - -0.6 975,987 - -1.9 975,987 - -1.5 975,987 - -2.0 975,987 - -1.5 975,987 - -1.4 975,987 - -1.5 975,987 - -0.8 975,987 - -2.3 975,987 - +0.8 975,987 - -2.2 975,987 - -0.3 976,095 - PFR28_00898 0.17 -2.9 976,095 - PFR28_00898 0.17 -0.9 976,115 + PFR28_00898 0.19 -1.2 976,116 - PFR28_00898 0.19 -2.1 976,116 - PFR28_00898 0.19 -1.7 976,158 + PFR28_00898 0.24 -1.1 976,255 + PFR28_00898 0.34 -0.4 976,255 + PFR28_00898 0.34 +0.1 976,255 + PFR28_00898 0.34 +2.4 976,255 + PFR28_00898 0.34 -0.6 976,255 + PFR28_00898 0.34 -1.2 976,255 + PFR28_00898 0.34 -0.4 976,256 - PFR28_00898 0.34 -2.0 976,256 - PFR28_00898 0.34 -2.0 976,256 - PFR28_00898 0.34 -0.8 976,341 + PFR28_00898 0.43 -0.7 976,341 + PFR28_00898 0.43 -0.4 976,341 + PFR28_00898 0.43 +0.3 976,341 + PFR28_00898 0.43 -1.6 976,341 + PFR28_00898 0.43 +0.4 976,342 - PFR28_00898 0.43 -2.2 976,583 + PFR28_00898 0.69 -1.5 976,583 + PFR28_00898 0.69 -1.7 976,583 + PFR28_00898 0.69 -1.1 976,584 - PFR28_00898 0.69 -0.2 976,842 + -0.0 976,842 + +0.2 976,842 + -0.5 976,843 - -2.3 976,843 - +0.2 976,873 + -1.3 976,874 - -1.2 976,932 + -1.6 976,932 + -1.0 976,932 + -2.0 976,932 + -0.7 976,932 + -0.6 976,970 + -0.6 976,970 + -0.1 976,970 + -0.4 976,971 - -3.0 976,971 - -0.3 976,971 - -1.3 976,986 + -0.4 976,986 + +0.0 976,987 - -2.7 977,045 - -1.5 977,048 + +2.0 977,115 + +0.3 977,115 + -2.6 977,229 + +0.3
Or see this region's nucleotide sequence