Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00191 and PFR28_00192 are separated by 104 nucleotides PFR28_00192 and PFR28_00193 are separated by 183 nucleotides
PFR28_00191: PFR28_00191 - Serine endoprotease DegS, at 214,640 to 215,800
_00191
PFR28_00192: PFR28_00192 - GTP cyclohydrolase 1 type 2, at 215,905 to 216,663
_00192
PFR28_00193: PFR28_00193 - Sulfate adenylyltransferase subunit 2, at 216,847 to 217,764
_00193
Position (kb) 215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 215.074 kb on + strand, within PFR28_00191 at 215.074 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.449 kb on + strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.590 kb on + strand, within PFR28_00191 at 215.590 kb on + strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.833 kb on - strand at 215.844 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.859 kb on + strand at 215.859 kb on + strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.889 kb on - strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.913 kb on - strand at 215.913 kb on - strand at 215.974 kb on + strand at 215.974 kb on + strand at 215.996 kb on + strand, within PFR28_00192 at 215.997 kb on - strand, within PFR28_00192 at 216.106 kb on + strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.196 kb on + strand, within PFR28_00192 at 216.197 kb on - strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.604 kb on + strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.671 kb on + strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.710 kb on + strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.738 kb on - strand at 216.768 kb on + strand at 216.768 kb on + strand at 216.769 kb on - strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.787 kb on - strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.843 kb on - strand at 216.843 kb on - strand at 216.943 kb on + strand, within PFR28_00193 at 216.943 kb on + strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.355 kb on - strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) 2.5 mM remove 215,074 + PFR28_00191 0.37 -0.8 215,074 + PFR28_00191 0.37 -1.0 215,166 + PFR28_00191 0.45 -0.8 215,166 + PFR28_00191 0.45 -1.7 215,166 + PFR28_00191 0.45 -0.9 215,167 - PFR28_00191 0.45 -1.6 215,167 - PFR28_00191 0.45 -1.8 215,167 - PFR28_00191 0.45 -1.7 215,167 - PFR28_00191 0.45 -1.0 215,167 - PFR28_00191 0.45 -1.6 215,449 + PFR28_00191 0.70 -0.6 215,450 - PFR28_00191 0.70 -0.1 215,450 - PFR28_00191 0.70 -2.8 215,450 - PFR28_00191 0.70 -1.5 215,450 - PFR28_00191 0.70 -0.4 215,450 - PFR28_00191 0.70 -1.6 215,451 + PFR28_00191 0.70 -1.0 215,451 + PFR28_00191 0.70 -2.1 215,451 + PFR28_00191 0.70 -2.2 215,452 - PFR28_00191 0.70 -1.4 215,452 - PFR28_00191 0.70 -0.1 215,452 - PFR28_00191 0.70 -2.6 215,452 - PFR28_00191 0.70 -0.5 215,452 - PFR28_00191 0.70 -2.3 215,452 - PFR28_00191 0.70 -1.3 215,590 + PFR28_00191 0.82 +1.6 215,590 + PFR28_00191 0.82 -0.8 215,591 - PFR28_00191 0.82 -1.8 215,591 - PFR28_00191 0.82 -1.2 215,591 - PFR28_00191 0.82 -4.5 215,592 + PFR28_00191 0.82 +0.0 215,592 + PFR28_00191 0.82 -0.5 215,592 + PFR28_00191 0.82 -1.0 215,592 + PFR28_00191 0.82 +0.3 215,593 - PFR28_00191 0.82 -1.3 215,593 - PFR28_00191 0.82 -0.5 215,593 - PFR28_00191 0.82 -0.4 215,593 - PFR28_00191 0.82 -0.2 215,593 - PFR28_00191 0.82 -0.4 215,593 - PFR28_00191 0.82 -2.8 215,637 + PFR28_00191 0.86 -1.0 215,637 + PFR28_00191 0.86 -1.2 215,637 + PFR28_00191 0.86 -0.9 215,638 - PFR28_00191 0.86 -0.6 215,638 - PFR28_00191 0.86 -1.2 215,638 - PFR28_00191 0.86 +0.1 215,801 + -1.9 215,801 + -1.9 215,801 + -0.9 215,801 + -1.6 215,801 + -1.9 215,802 - -0.8 215,802 - -0.7 215,802 - -0.9 215,802 - -0.9 215,802 - +0.6 215,812 + -2.0 215,812 + -0.6 215,812 + -0.4 215,812 + -3.3 215,812 + -0.1 215,813 - +0.1 215,813 - +0.7 215,813 - -0.5 215,813 - -0.4 215,813 - +1.2 215,813 - +0.3 215,833 - -0.8 215,844 + -0.0 215,857 + -0.9 215,857 + -1.6 215,857 + -0.1 215,857 + -1.6 215,858 - -1.9 215,858 - +0.8 215,858 - +0.4 215,858 - +0.7 215,859 + -1.9 215,859 + +0.8 215,860 - +0.1 215,860 - +3.0 215,860 - +3.2 215,860 - +0.6 215,889 - +0.4 215,892 + -0.8 215,892 + +1.2 215,892 + +0.8 215,892 + +0.4 215,893 - +2.9 215,893 - -0.7 215,893 - -0.1 215,893 - +0.3 215,893 - -0.5 215,893 - +0.4 215,913 - +0.8 215,913 - -0.3 215,974 + -2.0 215,974 + -1.1 215,996 + PFR28_00192 0.12 +0.2 215,997 - PFR28_00192 0.12 -2.6 216,106 + PFR28_00192 0.26 -1.2 216,107 - PFR28_00192 0.27 +0.3 216,107 - PFR28_00192 0.27 -0.9 216,107 - PFR28_00192 0.27 +0.7 216,107 - PFR28_00192 0.27 -1.4 216,196 + PFR28_00192 0.38 -0.4 216,197 - PFR28_00192 0.38 +1.3 216,451 + PFR28_00192 0.72 -0.6 216,451 + PFR28_00192 0.72 -0.6 216,451 + PFR28_00192 0.72 +2.6 216,451 + PFR28_00192 0.72 -0.2 216,451 + PFR28_00192 0.72 -1.2 216,451 + PFR28_00192 0.72 +0.4 216,451 + PFR28_00192 0.72 -0.5 216,451 + PFR28_00192 0.72 +0.3 216,451 + PFR28_00192 0.72 +0.8 216,452 - PFR28_00192 0.72 +0.1 216,452 - PFR28_00192 0.72 +0.6 216,452 - PFR28_00192 0.72 +0.4 216,452 - PFR28_00192 0.72 +0.4 216,452 - PFR28_00192 0.72 -0.6 216,487 + PFR28_00192 0.77 +0.1 216,487 + PFR28_00192 0.77 +1.1 216,488 - PFR28_00192 0.77 +1.3 216,488 - PFR28_00192 0.77 -0.5 216,604 + -1.0 216,605 - -0.2 216,605 - -1.6 216,605 - -0.9 216,669 + +0.4 216,669 + -0.3 216,669 + +0.8 216,669 + +0.4 216,669 + +0.7 216,669 + +0.8 216,669 + +1.8 216,669 + -0.1 216,669 + -1.1 216,669 + +1.1 216,669 + +1.2 216,669 + -1.2 216,670 - +0.1 216,670 - +1.0 216,670 - -0.4 216,670 - +0.8 216,670 - -0.7 216,670 - +0.9 216,670 - +3.1 216,670 - -1.5 216,670 - -0.9 216,670 - +0.9 216,670 - +0.1 216,670 - -1.5 216,670 - -0.9 216,670 - -0.5 216,671 + +0.4 216,672 - -0.5 216,672 - -0.0 216,672 - -0.6 216,672 - -0.6 216,672 - +0.6 216,710 + -2.1 216,737 + -0.1 216,738 - -2.6 216,738 - -1.7 216,768 + -0.8 216,768 + -0.8 216,769 - -1.1 216,786 + -1.1 216,786 + +0.1 216,786 + -0.4 216,786 + +0.5 216,787 - -1.2 216,824 + +2.3 216,824 + +0.9 216,824 + +1.1 216,843 - -2.8 216,843 - -0.4 216,943 + PFR28_00193 0.10 -3.5 216,943 + PFR28_00193 0.10 +1.6 216,944 - PFR28_00193 0.11 -0.9 216,944 - PFR28_00193 0.11 -3.3 217,060 + PFR28_00193 0.23 +0.6 217,060 + PFR28_00193 0.23 -0.9 217,060 + PFR28_00193 0.23 -3.2 217,061 - PFR28_00193 0.23 +0.5 217,061 - PFR28_00193 0.23 -1.6 217,061 - PFR28_00193 0.23 -2.4 217,219 + PFR28_00193 0.41 -1.3 217,219 + PFR28_00193 0.41 -2.0 217,219 + PFR28_00193 0.41 -3.8 217,219 + PFR28_00193 0.41 -1.2 217,219 + PFR28_00193 0.41 -3.3 217,219 + PFR28_00193 0.41 -2.1 217,220 - PFR28_00193 0.41 -0.9 217,220 - PFR28_00193 0.41 -2.5 217,220 - PFR28_00193 0.41 -2.4 217,220 - PFR28_00193 0.41 -2.8 217,220 - PFR28_00193 0.41 -1.3 217,220 - PFR28_00193 0.41 -0.9 217,220 - PFR28_00193 0.41 -2.2 217,220 - PFR28_00193 0.41 -2.4 217,355 - PFR28_00193 0.55 -2.0 217,432 + PFR28_00193 0.64 -2.1 217,432 + PFR28_00193 0.64 -1.2 217,432 + PFR28_00193 0.64 -3.6 217,432 + PFR28_00193 0.64 -2.1 217,432 + PFR28_00193 0.64 -2.2 217,432 + PFR28_00193 0.64 +0.7 217,432 + PFR28_00193 0.64 -1.4 217,432 + PFR28_00193 0.64 -2.4 217,432 + PFR28_00193 0.64 -2.0 217,433 - PFR28_00193 0.64 -4.2 217,433 - PFR28_00193 0.64 -1.6 217,433 - PFR28_00193 0.64 -0.1 217,433 - PFR28_00193 0.64 -2.3 217,433 - PFR28_00193 0.64 -1.6 217,438 + PFR28_00193 0.64 -1.6 217,438 + PFR28_00193 0.64 -1.3 217,438 + PFR28_00193 0.64 -1.6 217,438 + PFR28_00193 0.64 -3.3 217,438 + PFR28_00193 0.64 -0.6 217,439 - PFR28_00193 0.64 -2.2 217,439 - PFR28_00193 0.64 -1.4 217,468 + PFR28_00193 0.68 -3.2 217,468 + PFR28_00193 0.68 -3.2
Or see this region's nucleotide sequence