Strain Fitness in Agrobacterium fabrum C58 around Atu6097

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6096 and Atu6097 overlap by 40 nucleotidesAtu6097 and Atu6098 overlap by 4 nucleotidesAtu6098 and Atu6099 are separated by 380 nucleotides Atu6096: Atu6096 - conserved hypothetical protein, at 116,838 to 117,917 Atu6096 Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474 Atu6097 Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932 Atu6098 Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915 Atu6099 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 116.918 kb on + strandat 116.918 kb on + strandat 116.918 kb on + strandat 116.918 kb on + strandat 116.918 kb on + strandat 116.918 kb on + strandat 116.926 kb on - strandat 116.926 kb on - strandat 117.014 kb on - strand, within Atu6096at 117.018 kb on + strand, within Atu6096at 117.020 kb on + strand, within Atu6096at 117.037 kb on + strand, within Atu6096at 117.050 kb on + strand, within Atu6096at 117.053 kb on - strand, within Atu6096at 117.060 kb on + strand, within Atu6096at 117.073 kb on + strand, within Atu6096at 117.144 kb on + strand, within Atu6096at 117.232 kb on + strand, within Atu6096at 117.425 kb on + strand, within Atu6096at 117.487 kb on - strand, within Atu6096at 117.505 kb on + strand, within Atu6096at 117.510 kb on + strand, within Atu6096at 117.513 kb on - strand, within Atu6096at 117.520 kb on + strand, within Atu6096at 117.794 kb on + strand, within Atu6096at 117.794 kb on + strand, within Atu6096at 117.869 kb on + strandat 117.869 kb on + strandat 117.874 kb on + strandat 117.877 kb on - strandat 117.877 kb on - strandat 117.911 kb on + strandat 117.937 kb on - strandat 117.956 kb on + strand, within Atu6097at 117.979 kb on - strand, within Atu6097at 118.000 kb on - strand, within Atu6097at 118.039 kb on + strand, within Atu6097at 118.127 kb on + strand, within Atu6097at 118.127 kb on + strand, within Atu6097at 118.128 kb on + strand, within Atu6097at 118.135 kb on - strand, within Atu6097at 118.135 kb on - strand, within Atu6097at 118.214 kb on - strand, within Atu6097at 118.250 kb on - strand, within Atu6097at 118.294 kb on - strand, within Atu6097at 118.297 kb on + strand, within Atu6097at 118.331 kb on + strand, within Atu6097at 118.400 kb on + strand, within Atu6097at 118.411 kb on + strand, within Atu6097at 118.423 kb on + strandat 118.423 kb on + strandat 118.423 kb on + strandat 118.428 kb on + strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.436 kb on - strandat 118.438 kb on + strandat 118.446 kb on - strandat 118.446 kb on - strandat 118.513 kb on + strandat 118.513 kb on + strandat 118.858 kb on - strand, within Atu6098at 118.947 kb on - strandat 119.092 kb on + strandat 119.167 kb on + strandat 119.167 kb on + strandat 119.175 kb on - strandat 119.191 kb on + strandat 119.248 kb on - strandat 119.295 kb on + strandat 119.397 kb on + strand, within Atu6099at 119.397 kb on + strand, within Atu6099at 119.405 kb on - strand, within Atu6099at 119.455 kb on - strand, within Atu6099

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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116,918 + -0.8
116,918 + -0.3
116,918 + -1.0
116,918 + +1.7
116,918 + +2.3
116,918 + -1.0
116,926 - -0.1
116,926 - +0.0
117,014 - Atu6096 0.16 +0.3
117,018 + Atu6096 0.17 +1.3
117,020 + Atu6096 0.17 -1.7
117,037 + Atu6096 0.18 +0.6
117,050 + Atu6096 0.20 +0.4
117,053 - Atu6096 0.20 +1.2
117,060 + Atu6096 0.21 -0.1
117,073 + Atu6096 0.22 +1.4
117,144 + Atu6096 0.28 -0.0
117,232 + Atu6096 0.36 +2.2
117,425 + Atu6096 0.54 -0.3
117,487 - Atu6096 0.60 +2.0
117,505 + Atu6096 0.62 +0.5
117,510 + Atu6096 0.62 -1.8
117,513 - Atu6096 0.62 +0.1
117,520 + Atu6096 0.63 +0.4
117,794 + Atu6096 0.89 +1.2
117,794 + Atu6096 0.89 +1.9
117,869 + +1.7
117,869 + -0.0
117,874 + +0.7
117,877 - +0.2
117,877 - +1.7
117,911 + +2.1
117,937 - +0.3
117,956 + Atu6097 0.13 -0.5
117,979 - Atu6097 0.17 -0.5
118,000 - Atu6097 0.20 +1.3
118,039 + Atu6097 0.27 +0.3
118,127 + Atu6097 0.42 +0.1
118,127 + Atu6097 0.42 +1.0
118,128 + Atu6097 0.42 +0.6
118,135 - Atu6097 0.43 -0.8
118,135 - Atu6097 0.43 +0.5
118,214 - Atu6097 0.56 -2.2
118,250 - Atu6097 0.62 +1.1
118,294 - Atu6097 0.70 +0.9
118,297 + Atu6097 0.70 +1.8
118,331 + Atu6097 0.76 -0.3
118,400 + Atu6097 0.87 +0.9
118,411 + Atu6097 0.89 -0.9
118,423 + +2.5
118,423 + +0.7
118,423 + +1.7
118,428 + -0.4
118,431 - -0.3
118,431 - +2.6
118,431 - +1.5
118,431 - +0.1
118,436 - -0.5
118,438 + +1.0
118,446 - +2.0
118,446 - -2.0
118,513 + +0.8
118,513 + -0.6
118,858 - Atu6098 0.84 +0.5
118,947 - +1.3
119,092 + +1.9
119,167 + +0.2
119,167 + +0.1
119,175 - +1.8
119,191 + -0.9
119,248 - +1.7
119,295 + +0.2
119,397 + Atu6099 0.14 +0.0
119,397 + Atu6099 0.14 +0.1
119,405 - Atu6099 0.15 +1.2
119,455 - Atu6099 0.24 +1.4

Or see this region's nucleotide sequence