Strain Fitness in Agrobacterium fabrum C58 around Atu5096

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5094 and Atu5095 are separated by 90 nucleotidesAtu5095 and Atu5096 are separated by 209 nucleotidesAtu5096 and Atu5097 are separated by 55 nucleotides Atu5094: Atu5094 - ISL3 family transposase, at 98,238 to 99,791 Atu5094 Atu5095: Atu5095 - hypothetical protein, at 99,882 to 100,100 Atu5095 Atu5096: Atu5096 - hypothetical protein, at 100,310 to 101,083 Atu5096 Atu5097: Atu5097 - ATP-dependent DNA ligase, at 101,139 to 102,191 Atu5097 Position (kb) 100 101 102Strain fitness (log2 ratio) -1 0 1 2at 99.321 kb on - strand, within Atu5094at 99.328 kb on + strand, within Atu5094at 99.336 kb on - strand, within Atu5094at 99.348 kb on + strand, within Atu5094at 99.451 kb on - strand, within Atu5094at 99.471 kb on - strand, within Atu5094at 99.619 kb on + strand, within Atu5094at 99.644 kb on + strandat 99.644 kb on - strandat 99.652 kb on - strandat 99.669 kb on + strandat 99.669 kb on + strandat 99.687 kb on - strandat 99.707 kb on - strandat 99.713 kb on + strandat 99.949 kb on + strand, within Atu5095at 99.949 kb on + strand, within Atu5095at 99.951 kb on + strand, within Atu5095at 99.951 kb on + strand, within Atu5095at 99.957 kb on - strand, within Atu5095at 99.957 kb on - strand, within Atu5095at 99.959 kb on - strand, within Atu5095at 99.959 kb on - strand, within Atu5095at 99.959 kb on - strand, within Atu5095at 99.986 kb on + strand, within Atu5095at 99.994 kb on - strand, within Atu5095at 99.994 kb on - strand, within Atu5095at 100.004 kb on + strand, within Atu5095at 100.040 kb on - strand, within Atu5095at 100.084 kb on + strandat 100.094 kb on + strandat 100.102 kb on - strandat 100.102 kb on - strandat 100.215 kb on + strandat 100.260 kb on - strandat 100.291 kb on - strandat 100.291 kb on - strandat 100.338 kb on - strandat 100.364 kb on + strandat 100.364 kb on + strandat 100.373 kb on - strandat 100.431 kb on - strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.496 kb on - strand, within Atu5096at 100.507 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.560 kb on + strand, within Atu5096at 100.571 kb on + strand, within Atu5096at 100.615 kb on - strand, within Atu5096at 100.661 kb on - strand, within Atu5096at 100.744 kb on - strand, within Atu5096at 100.775 kb on - strand, within Atu5096at 100.790 kb on + strand, within Atu5096at 100.802 kb on + strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.859 kb on - strand, within Atu5096at 100.889 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 101.073 kb on + strandat 101.141 kb on + strandat 101.166 kb on + strandat 101.185 kb on + strandat 101.251 kb on - strand, within Atu5097at 101.260 kb on - strand, within Atu5097at 101.423 kb on + strand, within Atu5097at 101.478 kb on + strand, within Atu5097at 101.528 kb on + strand, within Atu5097at 101.536 kb on + strand, within Atu5097at 101.544 kb on - strand, within Atu5097at 101.584 kb on - strand, within Atu5097at 101.735 kb on + strand, within Atu5097at 101.735 kb on + strand, within Atu5097at 101.742 kb on + strand, within Atu5097at 101.743 kb on + strand, within Atu5097at 101.970 kb on + strand, within Atu5097at 102.000 kb on - strand, within Atu5097at 102.008 kb on - strand, within Atu5097at 102.015 kb on + strand, within Atu5097at 102.025 kb on - strand, within Atu5097at 102.048 kb on - strand, within Atu5097

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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99,321 - Atu5094 0.70 +1.5
99,328 + Atu5094 0.70 +0.8
99,336 - Atu5094 0.71 +0.1
99,348 + Atu5094 0.71 +1.4
99,451 - Atu5094 0.78 +0.3
99,471 - Atu5094 0.79 +1.1
99,619 + Atu5094 0.89 +0.5
99,644 + +2.5
99,644 - +2.7
99,652 - -0.1
99,669 + +0.6
99,669 + -0.5
99,687 - +0.6
99,707 - -1.0
99,713 + +2.0
99,949 + Atu5095 0.31 -0.0
99,949 + Atu5095 0.31 +0.2
99,951 + Atu5095 0.32 -0.1
99,951 + Atu5095 0.32 +2.7
99,957 - Atu5095 0.34 -0.1
99,957 - Atu5095 0.34 +0.8
99,959 - Atu5095 0.35 +0.3
99,959 - Atu5095 0.35 +1.6
99,959 - Atu5095 0.35 -1.1
99,986 + Atu5095 0.47 +2.4
99,994 - Atu5095 0.51 +1.0
99,994 - Atu5095 0.51 +1.5
100,004 + Atu5095 0.56 -0.2
100,040 - Atu5095 0.72 -0.3
100,084 + +1.5
100,094 + -0.0
100,102 - -1.1
100,102 - +0.1
100,215 + -0.1
100,260 - +1.1
100,291 - -0.7
100,291 - -0.1
100,338 - +0.1
100,364 + +1.3
100,364 + -1.0
100,373 - +0.2
100,431 - Atu5096 0.16 -0.6
100,433 + Atu5096 0.16 +0.2
100,433 + Atu5096 0.16 +0.0
100,433 + Atu5096 0.16 +0.1
100,433 + Atu5096 0.16 -0.1
100,496 - Atu5096 0.24 +1.3
100,507 - Atu5096 0.25 -0.6
100,517 - Atu5096 0.27 +0.4
100,517 - Atu5096 0.27 -1.0
100,517 - Atu5096 0.27 +0.6
100,560 + Atu5096 0.32 -0.1
100,571 + Atu5096 0.34 -0.2
100,615 - Atu5096 0.39 -1.0
100,661 - Atu5096 0.45 +1.0
100,744 - Atu5096 0.56 +1.7
100,775 - Atu5096 0.60 +0.7
100,790 + Atu5096 0.62 -0.5
100,802 + Atu5096 0.64 -0.1
100,810 - Atu5096 0.65 -0.1
100,810 - Atu5096 0.65 +0.4
100,810 - Atu5096 0.65 +1.7
100,810 - Atu5096 0.65 -1.1
100,839 + Atu5096 0.68 +2.7
100,839 + Atu5096 0.68 +1.3
100,839 + Atu5096 0.68 +1.4
100,859 - Atu5096 0.71 +0.0
100,889 - Atu5096 0.75 +0.1
100,915 - Atu5096 0.78 -1.0
100,915 - Atu5096 0.78 +0.1
100,915 - Atu5096 0.78 +2.0
101,073 + +0.4
101,141 + +0.2
101,166 + +0.1
101,185 + -0.0
101,251 - Atu5097 0.11 -0.9
101,260 - Atu5097 0.11 +1.0
101,423 + Atu5097 0.27 +0.7
101,478 + Atu5097 0.32 -0.0
101,528 + Atu5097 0.37 +0.1
101,536 + Atu5097 0.38 +1.6
101,544 - Atu5097 0.38 +1.3
101,584 - Atu5097 0.42 -0.4
101,735 + Atu5097 0.57 +0.6
101,735 + Atu5097 0.57 +0.5
101,742 + Atu5097 0.57 +0.9
101,743 + Atu5097 0.57 +2.2
101,970 + Atu5097 0.79 +1.6
102,000 - Atu5097 0.82 -0.2
102,008 - Atu5097 0.83 -0.0
102,015 + Atu5097 0.83 +1.0
102,025 - Atu5097 0.84 +2.0
102,048 - Atu5097 0.86 +0.1

Or see this region's nucleotide sequence