Strain Fitness in Agrobacterium fabrum C58 around Atu5080

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5080 and Atu5081 overlap by 4 nucleotidesAtu5081 and Atu5082 are separated by 28 nucleotides Atu5080: Atu5080 - ABC transporter membrane spanning protein (sugar), at 80,926 to 81,861 Atu5080 Atu5081: Atu5081 - ABC transporter membrane spanning protein (sugar), at 81,858 to 82,736 Atu5081 Atu5082: Atu5082 - hypothetical protein, at 82,765 to 84,528 Atu5082 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1 2 3at 79.937 kb on + strandat 79.937 kb on + strandat 79.962 kb on + strandat 79.962 kb on + strandat 79.971 kb on - strandat 80.023 kb on + strandat 80.028 kb on + strandat 80.036 kb on - strandat 80.064 kb on + strandat 80.064 kb on + strandat 80.072 kb on - strandat 80.122 kb on + strandat 80.122 kb on + strandat 80.122 kb on + strandat 80.132 kb on + strandat 80.198 kb on + strandat 80.206 kb on - strandat 80.211 kb on - strandat 80.224 kb on - strandat 80.255 kb on - strandat 80.303 kb on + strandat 80.308 kb on + strandat 80.316 kb on - strandat 80.451 kb on + strandat 80.651 kb on + strandat 80.651 kb on + strandat 80.656 kb on + strandat 80.659 kb on - strandat 80.689 kb on + strandat 80.697 kb on - strandat 80.709 kb on + strandat 80.770 kb on - strandat 80.774 kb on + strandat 80.795 kb on - strandat 80.797 kb on + strandat 80.809 kb on + strandat 80.817 kb on - strandat 80.894 kb on - strandat 80.917 kb on - strandat 80.919 kb on - strandat 80.919 kb on - strandat 80.929 kb on - strandat 80.956 kb on + strandat 80.985 kb on + strandat 80.985 kb on + strandat 81.013 kb on - strandat 81.018 kb on - strandat 81.148 kb on + strand, within Atu5080at 81.203 kb on - strand, within Atu5080at 81.263 kb on + strand, within Atu5080at 81.263 kb on + strand, within Atu5080at 81.271 kb on - strand, within Atu5080at 81.271 kb on - strand, within Atu5080at 81.271 kb on - strand, within Atu5080at 81.347 kb on - strand, within Atu5080at 81.384 kb on - strand, within Atu5080at 81.395 kb on + strand, within Atu5080at 81.442 kb on + strand, within Atu5080at 81.442 kb on + strand, within Atu5080at 81.442 kb on + strand, within Atu5080at 81.770 kb on - strandat 81.808 kb on + strandat 81.816 kb on - strandat 81.820 kb on + strandat 81.820 kb on + strandat 81.820 kb on + strandat 81.828 kb on - strandat 81.839 kb on + strandat 81.867 kb on + strandat 81.875 kb on - strandat 81.949 kb on - strand, within Atu5081at 82.114 kb on + strand, within Atu5081at 82.127 kb on - strand, within Atu5081at 82.212 kb on - strand, within Atu5081at 82.272 kb on - strand, within Atu5081at 82.326 kb on + strand, within Atu5081at 82.326 kb on + strand, within Atu5081at 82.380 kb on + strand, within Atu5081at 82.452 kb on + strand, within Atu5081at 82.452 kb on + strand, within Atu5081at 82.460 kb on - strand, within Atu5081at 82.460 kb on - strand, within Atu5081at 82.475 kb on - strand, within Atu5081at 82.557 kb on + strand, within Atu5081at 82.565 kb on - strand, within Atu5081at 82.565 kb on - strand, within Atu5081at 82.575 kb on + strand, within Atu5081at 82.591 kb on - strand, within Atu5081at 82.651 kb on + strandat 82.669 kb on + strandat 82.669 kb on + strandat 82.669 kb on + strandat 82.677 kb on - strandat 82.719 kb on - strandat 82.733 kb on - strandat 82.792 kb on - strandat 82.801 kb on - strandat 82.815 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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79,937 + +1.6
79,937 + +1.2
79,962 + +2.7
79,962 + +0.3
79,971 - +0.8
80,023 + -0.0
80,028 + -0.1
80,036 - +1.0
80,064 + -1.9
80,064 + -0.3
80,072 - -0.1
80,122 + +0.7
80,122 + +1.6
80,122 + +0.1
80,132 + +0.8
80,198 + -0.1
80,206 - -0.0
80,211 - +1.3
80,224 - -1.0
80,255 - +0.8
80,303 + +1.4
80,308 + +1.3
80,316 - +0.0
80,451 + +0.3
80,651 + +3.3
80,651 + +0.6
80,656 + -1.0
80,659 - -1.0
80,689 + -0.4
80,697 - +1.2
80,709 + -0.6
80,770 - -0.8
80,774 + +1.5
80,795 - -0.4
80,797 + -1.0
80,809 + +0.7
80,817 - -0.1
80,894 - +0.8
80,917 - -0.8
80,919 - -1.2
80,919 - +0.8
80,929 - +0.9
80,956 + -0.5
80,985 + +2.7
80,985 + -0.3
81,013 - +0.7
81,018 - -0.4
81,148 + Atu5080 0.24 -1.1
81,203 - Atu5080 0.30 -0.1
81,263 + Atu5080 0.36 -0.4
81,263 + Atu5080 0.36 +0.8
81,271 - Atu5080 0.37 +1.7
81,271 - Atu5080 0.37 -0.7
81,271 - Atu5080 0.37 -0.8
81,347 - Atu5080 0.45 +0.3
81,384 - Atu5080 0.49 -0.1
81,395 + Atu5080 0.50 +0.0
81,442 + Atu5080 0.55 +1.4
81,442 + Atu5080 0.55 +0.5
81,442 + Atu5080 0.55 -0.4
81,770 - +2.0
81,808 + -0.8
81,816 - +0.3
81,820 + -0.2
81,820 + -0.9
81,820 + -1.1
81,828 - -0.5
81,839 + +1.2
81,867 + +0.2
81,875 - +0.1
81,949 - Atu5081 0.10 +0.7
82,114 + Atu5081 0.29 +0.0
82,127 - Atu5081 0.31 +1.2
82,212 - Atu5081 0.40 +0.2
82,272 - Atu5081 0.47 +2.3
82,326 + Atu5081 0.53 +1.7
82,326 + Atu5081 0.53 -0.5
82,380 + Atu5081 0.59 -0.2
82,452 + Atu5081 0.68 +2.5
82,452 + Atu5081 0.68 +0.4
82,460 - Atu5081 0.68 +0.1
82,460 - Atu5081 0.68 +0.1
82,475 - Atu5081 0.70 +0.3
82,557 + Atu5081 0.80 +0.2
82,565 - Atu5081 0.80 +0.5
82,565 - Atu5081 0.80 +2.3
82,575 + Atu5081 0.82 -0.6
82,591 - Atu5081 0.83 +1.3
82,651 + -0.1
82,669 + +0.0
82,669 + -0.8
82,669 + +0.1
82,677 - +0.6
82,719 - -0.6
82,733 - -0.3
82,792 - -1.6
82,801 - +1.7
82,815 - +2.2

Or see this region's nucleotide sequence