Strain Fitness in Agrobacterium fabrum C58 around Atu5054

Experiment: 5-Aminolevulinic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5052 and Atu5053 are separated by 72 nucleotidesAtu5053 and Atu5054 are separated by 9 nucleotidesAtu5054 and Atu5055 are separated by 11 nucleotides Atu5052: Atu5052 - small heat shock protein, at 51,311 to 51,787 Atu5052 Atu5053: Atu5053 - hypothetical protein, at 51,860 to 52,159 Atu5053 Atu5054: Atu5054 - hypothetical protein, at 52,169 to 52,444 Atu5054 Atu5055: Atu5055 - ATP-dependent DNA ligase, at 52,456 to 55,110 Atu5055 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 51.241 kb on + strandat 51.244 kb on - strandat 51.249 kb on - strandat 51.249 kb on - strandat 51.249 kb on - strandat 51.285 kb on - strandat 51.299 kb on - strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.301 kb on + strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.309 kb on - strandat 51.320 kb on + strandat 51.330 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.335 kb on + strandat 51.338 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.343 kb on - strandat 51.390 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.430 kb on - strand, within Atu5052at 51.443 kb on + strand, within Atu5052at 51.550 kb on - strand, within Atu5052at 51.556 kb on + strand, within Atu5052at 51.594 kb on + strand, within Atu5052at 51.657 kb on + strand, within Atu5052at 51.657 kb on - strand, within Atu5052at 51.737 kb on - strand, within Atu5052at 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.753 kb on + strandat 51.758 kb on + strandat 51.761 kb on - strandat 51.761 kb on - strandat 51.855 kb on + strandat 51.858 kb on - strandat 51.882 kb on - strandat 52.142 kb on + strandat 52.255 kb on - strand, within Atu5054at 52.278 kb on + strand, within Atu5054at 52.285 kb on - strand, within Atu5054at 52.318 kb on + strand, within Atu5054at 52.399 kb on + strand, within Atu5054at 52.399 kb on + strand, within Atu5054at 52.426 kb on - strandat 52.437 kb on - strandat 52.437 kb on - strandat 52.461 kb on - strandat 52.505 kb on + strandat 52.531 kb on - strandat 52.558 kb on + strandat 52.611 kb on + strandat 52.619 kb on - strandat 52.638 kb on - strandat 52.679 kb on - strandat 52.732 kb on + strand, within Atu5055at 52.782 kb on - strand, within Atu5055at 52.805 kb on + strand, within Atu5055at 52.812 kb on + strand, within Atu5055at 52.854 kb on + strand, within Atu5055at 52.932 kb on + strand, within Atu5055at 52.951 kb on - strand, within Atu5055at 52.955 kb on + strand, within Atu5055at 52.963 kb on - strand, within Atu5055at 52.987 kb on + strand, within Atu5055at 53.041 kb on - strand, within Atu5055at 53.059 kb on + strand, within Atu5055at 53.059 kb on + strand, within Atu5055at 53.133 kb on - strand, within Atu5055at 53.134 kb on - strand, within Atu5055at 53.134 kb on - strand, within Atu5055at 53.145 kb on + strand, within Atu5055at 53.145 kb on + strand, within Atu5055at 53.231 kb on + strand, within Atu5055at 53.239 kb on - strand, within Atu5055at 53.250 kb on + strand, within Atu5055at 53.258 kb on - strand, within Atu5055at 53.265 kb on + strand, within Atu5055at 53.265 kb on + strand, within Atu5055at 53.273 kb on - strand, within Atu5055at 53.293 kb on + strand, within Atu5055at 53.363 kb on + strand, within Atu5055at 53.370 kb on - strand, within Atu5055at 53.403 kb on + strand, within Atu5055at 53.411 kb on - strand, within Atu5055at 53.432 kb on - strand, within Atu5055

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
remove
51,241 + -0.3
51,244 - +1.0
51,249 - +2.2
51,249 - -1.2
51,249 - +1.0
51,285 - -2.0
51,299 - +0.9
51,301 + +0.8
51,301 + +1.2
51,301 + +2.4
51,301 + +1.9
51,309 - -0.1
51,309 - +0.8
51,309 - +0.4
51,309 - +1.2
51,320 + +0.0
51,330 + +0.5
51,335 + -1.6
51,335 + +0.1
51,335 + +1.0
51,335 + -0.5
51,335 + +1.7
51,335 + +0.3
51,335 + +0.6
51,335 + +1.4
51,338 - +0.7
51,343 - +2.5
51,343 - -0.2
51,343 - -0.4
51,343 - +1.5
51,343 - +2.7
51,390 - Atu5052 0.17 +0.6
51,430 - Atu5052 0.25 +2.0
51,430 - Atu5052 0.25 +1.1
51,430 - Atu5052 0.25 +1.7
51,430 - Atu5052 0.25 -0.0
51,443 + Atu5052 0.28 +1.2
51,550 - Atu5052 0.50 +0.7
51,556 + Atu5052 0.51 +0.3
51,594 + Atu5052 0.59 -0.2
51,657 + Atu5052 0.73 +1.4
51,657 - Atu5052 0.73 +0.5
51,737 - Atu5052 0.89 +2.1
51,753 + +1.0
51,753 + +0.4
51,753 + -0.2
51,753 + -1.1
51,758 + -1.0
51,761 - -1.7
51,761 - +0.8
51,855 + +1.8
51,858 - +0.7
51,882 - +2.8
52,142 + +1.0
52,255 - Atu5054 0.31 -0.9
52,278 + Atu5054 0.39 +0.6
52,285 - Atu5054 0.42 -0.4
52,318 + Atu5054 0.54 -0.5
52,399 + Atu5054 0.83 -1.3
52,399 + Atu5054 0.83 -0.1
52,426 - +0.2
52,437 - -0.9
52,437 - +2.1
52,461 - +0.9
52,505 + -2.3
52,531 - -1.0
52,558 + +0.2
52,611 + +1.0
52,619 - -0.7
52,638 - +1.0
52,679 - -0.9
52,732 + Atu5055 0.10 -0.2
52,782 - Atu5055 0.12 +2.0
52,805 + Atu5055 0.13 +1.7
52,812 + Atu5055 0.13 -0.5
52,854 + Atu5055 0.15 +0.5
52,932 + Atu5055 0.18 +0.5
52,951 - Atu5055 0.19 -0.9
52,955 + Atu5055 0.19 +1.6
52,963 - Atu5055 0.19 -0.1
52,987 + Atu5055 0.20 +1.3
53,041 - Atu5055 0.22 -0.6
53,059 + Atu5055 0.23 +1.0
53,059 + Atu5055 0.23 -1.0
53,133 - Atu5055 0.25 +0.7
53,134 - Atu5055 0.26 +0.4
53,134 - Atu5055 0.26 -0.5
53,145 + Atu5055 0.26 -0.2
53,145 + Atu5055 0.26 +0.4
53,231 + Atu5055 0.29 +0.9
53,239 - Atu5055 0.29 +1.1
53,250 + Atu5055 0.30 +0.3
53,258 - Atu5055 0.30 +2.7
53,265 + Atu5055 0.30 +0.0
53,265 + Atu5055 0.30 +2.5
53,273 - Atu5055 0.31 -0.3
53,293 + Atu5055 0.32 -0.0
53,363 + Atu5055 0.34 +0.1
53,370 - Atu5055 0.34 +0.4
53,403 + Atu5055 0.36 -0.5
53,411 - Atu5055 0.36 +0.8
53,432 - Atu5055 0.37 +2.0

Or see this region's nucleotide sequence