Strain Fitness in Agrobacterium fabrum C58 around Atu2826

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2825 and Atu2826 overlap by 4 nucleotidesAtu2826 and Atu2827 are separated by 116 nucleotidesAtu2827 and Atu2828 are separated by 61 nucleotides Atu2825: Atu2825 - Sun protein, at 2,829,891 to 2,831,276 Atu2825 Atu2826: Atu2826 - protease heat shock protein, at 2,831,273 to 2,832,238 Atu2826 Atu2827: Atu2827 - hypothetical protein, at 2,832,355 to 2,832,567 Atu2827 Atu2828: Atu2828 - chromosome Partitioning Protein, at 2,832,629 to 2,833,510 Atu2828 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2830.382 kb on + strand, within Atu2825at 2830.382 kb on + strand, within Atu2825at 2830.390 kb on - strand, within Atu2825at 2830.455 kb on - strand, within Atu2825at 2830.478 kb on + strand, within Atu2825at 2830.556 kb on - strand, within Atu2825at 2830.651 kb on + strand, within Atu2825at 2830.654 kb on - strand, within Atu2825at 2830.654 kb on - strand, within Atu2825at 2830.660 kb on + strand, within Atu2825at 2830.795 kb on + strand, within Atu2825at 2830.807 kb on + strand, within Atu2825at 2830.905 kb on + strand, within Atu2825at 2830.928 kb on + strand, within Atu2825at 2830.951 kb on - strand, within Atu2825at 2830.958 kb on + strand, within Atu2825at 2831.022 kb on + strand, within Atu2825at 2831.032 kb on + strand, within Atu2825at 2831.032 kb on + strand, within Atu2825at 2831.068 kb on + strand, within Atu2825at 2831.102 kb on - strand, within Atu2825at 2831.277 kb on - strandat 2831.318 kb on - strandat 2831.478 kb on - strand, within Atu2826at 2831.506 kb on - strand, within Atu2826at 2831.578 kb on + strand, within Atu2826at 2831.580 kb on - strand, within Atu2826at 2831.667 kb on - strand, within Atu2826at 2831.714 kb on + strand, within Atu2826at 2831.714 kb on + strand, within Atu2826at 2831.813 kb on + strand, within Atu2826at 2831.828 kb on + strand, within Atu2826at 2831.862 kb on - strand, within Atu2826at 2831.890 kb on + strand, within Atu2826at 2832.142 kb on - strandat 2832.191 kb on - strandat 2832.191 kb on - strandat 2832.397 kb on + strand, within Atu2827at 2832.410 kb on - strand, within Atu2827at 2832.410 kb on - strand, within Atu2827at 2832.472 kb on + strand, within Atu2827

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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2,830,382 + Atu2825 0.35 -1.4
2,830,382 + Atu2825 0.35 -1.0
2,830,390 - Atu2825 0.36 +0.1
2,830,455 - Atu2825 0.41 -0.5
2,830,478 + Atu2825 0.42 -0.9
2,830,556 - Atu2825 0.48 +0.6
2,830,651 + Atu2825 0.55 +0.6
2,830,654 - Atu2825 0.55 -0.5
2,830,654 - Atu2825 0.55 +1.0
2,830,660 + Atu2825 0.55 -0.1
2,830,795 + Atu2825 0.65 -0.0
2,830,807 + Atu2825 0.66 +0.0
2,830,905 + Atu2825 0.73 -0.3
2,830,928 + Atu2825 0.75 +0.1
2,830,951 - Atu2825 0.76 +0.1
2,830,958 + Atu2825 0.77 -0.3
2,831,022 + Atu2825 0.82 +0.4
2,831,032 + Atu2825 0.82 -0.2
2,831,032 + Atu2825 0.82 -0.3
2,831,068 + Atu2825 0.85 -0.1
2,831,102 - Atu2825 0.87 -0.4
2,831,277 - -0.1
2,831,318 - -0.9
2,831,478 - Atu2826 0.21 -1.0
2,831,506 - Atu2826 0.24 -1.9
2,831,578 + Atu2826 0.32 +0.8
2,831,580 - Atu2826 0.32 -1.1
2,831,667 - Atu2826 0.41 -0.2
2,831,714 + Atu2826 0.46 -0.1
2,831,714 + Atu2826 0.46 -0.6
2,831,813 + Atu2826 0.56 +0.3
2,831,828 + Atu2826 0.57 -1.5
2,831,862 - Atu2826 0.61 +0.2
2,831,890 + Atu2826 0.64 +1.6
2,832,142 - -0.2
2,832,191 - +0.4
2,832,191 - +0.1
2,832,397 + Atu2827 0.20 +0.4
2,832,410 - Atu2827 0.26 +0.0
2,832,410 - Atu2827 0.26 +0.1
2,832,472 + Atu2827 0.55 +0.7

Or see this region's nucleotide sequence