Strain Fitness in Agrobacterium fabrum C58 around Atu0978

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0977 and Atu0978 are separated by 272 nucleotidesAtu0978 and Atu0979 are separated by 9 nucleotides Atu0977: Atu0977 - serine protease DO-like protease, at 966,101 to 967,672 Atu0977 Atu0978: Atu0978 - two component response regulator, at 967,945 to 968,703 Atu0978 Atu0979: Atu0979 - two component sensor kinase, at 968,713 to 970,122 Atu0979 Position (kb) 967 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 967.183 kb on + strand, within Atu0977at 967.265 kb on + strand, within Atu0977at 967.511 kb on + strand, within Atu0977at 967.580 kb on - strandat 967.582 kb on + strandat 967.582 kb on + strandat 967.752 kb on - strandat 967.828 kb on + strandat 967.896 kb on - strandat 967.924 kb on - strandat 967.991 kb on + strandat 968.051 kb on + strand, within Atu0978at 968.059 kb on + strand, within Atu0978at 968.060 kb on - strand, within Atu0978at 968.101 kb on + strand, within Atu0978at 968.144 kb on - strand, within Atu0978at 968.187 kb on + strand, within Atu0978at 968.191 kb on - strand, within Atu0978at 968.234 kb on + strand, within Atu0978at 968.242 kb on - strand, within Atu0978at 968.275 kb on + strand, within Atu0978at 968.347 kb on + strand, within Atu0978at 968.384 kb on - strand, within Atu0978at 968.397 kb on + strand, within Atu0978at 968.405 kb on - strand, within Atu0978at 968.594 kb on - strand, within Atu0978at 968.663 kb on - strandat 968.729 kb on - strandat 968.729 kb on - strandat 968.773 kb on - strandat 968.831 kb on - strandat 968.994 kb on - strand, within Atu0979at 969.132 kb on + strand, within Atu0979at 969.140 kb on - strand, within Atu0979at 969.144 kb on + strand, within Atu0979at 969.236 kb on + strand, within Atu0979at 969.241 kb on + strand, within Atu0979at 969.267 kb on + strand, within Atu0979at 969.390 kb on + strand, within Atu0979at 969.465 kb on + strand, within Atu0979at 969.466 kb on - strand, within Atu0979at 969.490 kb on - strand, within Atu0979at 969.587 kb on + strand, within Atu0979at 969.590 kb on + strand, within Atu0979at 969.600 kb on + strand, within Atu0979at 969.623 kb on - strand, within Atu0979

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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967,183 + Atu0977 0.69 -1.5
967,265 + Atu0977 0.74 -0.6
967,511 + Atu0977 0.90 +0.0
967,580 - +1.9
967,582 + -0.3
967,582 + +0.3
967,752 - +0.1
967,828 + -0.3
967,896 - -0.9
967,924 - +1.5
967,991 + -0.1
968,051 + Atu0978 0.14 -0.6
968,059 + Atu0978 0.15 -0.4
968,060 - Atu0978 0.15 -0.8
968,101 + Atu0978 0.21 -0.3
968,144 - Atu0978 0.26 -0.0
968,187 + Atu0978 0.32 -0.5
968,191 - Atu0978 0.32 -1.8
968,234 + Atu0978 0.38 -0.3
968,242 - Atu0978 0.39 -1.1
968,275 + Atu0978 0.43 -0.6
968,347 + Atu0978 0.53 -0.1
968,384 - Atu0978 0.58 -0.4
968,397 + Atu0978 0.60 -0.4
968,405 - Atu0978 0.61 -0.6
968,594 - Atu0978 0.86 -0.5
968,663 - -0.0
968,729 - +0.7
968,729 - +0.1
968,773 - -0.5
968,831 - -0.2
968,994 - Atu0979 0.20 -0.5
969,132 + Atu0979 0.30 -0.4
969,140 - Atu0979 0.30 -0.6
969,144 + Atu0979 0.31 -0.8
969,236 + Atu0979 0.37 -0.9
969,241 + Atu0979 0.37 +0.4
969,267 + Atu0979 0.39 -0.6
969,390 + Atu0979 0.48 +1.6
969,465 + Atu0979 0.53 +0.3
969,466 - Atu0979 0.53 +0.3
969,490 - Atu0979 0.55 -0.4
969,587 + Atu0979 0.62 -0.5
969,590 + Atu0979 0.62 -0.2
969,600 + Atu0979 0.63 +1.0
969,623 - Atu0979 0.65 -1.7

Or see this region's nucleotide sequence