Strain Fitness in Agrobacterium fabrum C58 around Atu0092

Experiment: 5-Aminolevulinic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0091 and Atu0092 are separated by 22 nucleotidesAtu0092 and Atu0093 are separated by 34 nucleotidesAtu0093 and Atu0094 are separated by 58 nucleotides Atu0091: Atu0091 - MFS permease, at 94,974 to 96,485 Atu0091 Atu0092: Atu0092 - lytic murein transglycosylase, at 96,508 to 97,773 Atu0092 Atu0093: Atu0093 - Recombination protein, at 97,808 to 98,413 Atu0093 Atu0094: Atu0094 - hypothetical protein, at 98,472 to 99,086 Atu0094 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.535 kb on + strand, within Atu0091at 95.535 kb on + strand, within Atu0091at 95.547 kb on + strand, within Atu0091at 95.586 kb on - strand, within Atu0091at 95.610 kb on - strand, within Atu0091at 95.620 kb on - strand, within Atu0091at 95.645 kb on + strand, within Atu0091at 95.654 kb on - strand, within Atu0091at 95.919 kb on - strand, within Atu0091at 95.931 kb on - strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 96.009 kb on - strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.118 kb on + strand, within Atu0091at 96.126 kb on - strand, within Atu0091at 96.172 kb on + strand, within Atu0091at 96.252 kb on - strand, within Atu0091at 96.332 kb on - strand, within Atu0091at 96.368 kb on - strandat 96.411 kb on + strandat 96.464 kb on + strandat 96.477 kb on - strandat 96.581 kb on - strandat 96.581 kb on - strandat 96.632 kb on + strandat 96.640 kb on - strand, within Atu0092at 96.654 kb on - strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.718 kb on - strand, within Atu0092at 96.728 kb on - strand, within Atu0092at 96.755 kb on + strand, within Atu0092at 96.767 kb on + strand, within Atu0092at 96.826 kb on + strand, within Atu0092at 96.876 kb on + strand, within Atu0092at 96.939 kb on - strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.951 kb on + strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.113 kb on - strand, within Atu0092at 97.216 kb on - strand, within Atu0092at 97.217 kb on + strand, within Atu0092at 97.241 kb on + strand, within Atu0092at 97.398 kb on + strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.443 kb on + strand, within Atu0092at 97.521 kb on + strand, within Atu0092at 97.569 kb on - strand, within Atu0092at 97.657 kb on - strandat 97.709 kb on - strandat 97.709 kb on - strandat 97.791 kb on + strandat 97.804 kb on + strandat 97.841 kb on + strandat 97.852 kb on + strandat 98.002 kb on + strand, within Atu0093at 98.026 kb on + strand, within Atu0093at 98.076 kb on + strand, within Atu0093at 98.076 kb on + strand, within Atu0093at 98.094 kb on - strand, within Atu0093at 98.098 kb on - strand, within Atu0093at 98.194 kb on - strand, within Atu0093at 98.231 kb on + strand, within Atu0093at 98.245 kb on - strand, within Atu0093at 98.249 kb on + strand, within Atu0093at 98.249 kb on + strand, within Atu0093at 98.466 kb on - strandat 98.489 kb on + strandat 98.489 kb on + strandat 98.616 kb on + strand, within Atu0094at 98.616 kb on + strand, within Atu0094at 98.624 kb on - strand, within Atu0094at 98.653 kb on + strand, within Atu0094at 98.682 kb on + strand, within Atu0094at 98.690 kb on - strand, within Atu0094at 98.770 kb on + strand, within Atu0094

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminolevulinic (N)
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95,535 + Atu0091 0.37 +0.3
95,535 + Atu0091 0.37 +1.3
95,547 + Atu0091 0.38 -1.6
95,586 - Atu0091 0.40 +0.1
95,610 - Atu0091 0.42 -1.1
95,620 - Atu0091 0.43 +0.5
95,645 + Atu0091 0.44 -0.2
95,654 - Atu0091 0.45 -0.5
95,919 - Atu0091 0.62 +0.1
95,931 - Atu0091 0.63 +2.9
95,951 + Atu0091 0.65 -1.1
95,951 + Atu0091 0.65 +0.3
96,009 - Atu0091 0.68 -0.4
96,073 + Atu0091 0.73 -1.2
96,073 + Atu0091 0.73 +0.0
96,118 + Atu0091 0.76 +0.5
96,126 - Atu0091 0.76 +1.1
96,172 + Atu0091 0.79 +0.2
96,252 - Atu0091 0.85 -0.3
96,332 - Atu0091 0.90 +1.3
96,368 - +0.3
96,411 + +0.0
96,464 + +0.4
96,477 - -0.4
96,581 - +0.7
96,581 - -0.2
96,632 + -0.9
96,640 - Atu0092 0.10 -0.2
96,654 - Atu0092 0.12 -0.6
96,679 + Atu0092 0.14 -0.2
96,679 + Atu0092 0.14 -0.6
96,718 - Atu0092 0.17 +0.7
96,728 - Atu0092 0.17 +0.4
96,755 + Atu0092 0.20 +0.3
96,767 + Atu0092 0.20 -0.1
96,826 + Atu0092 0.25 +0.5
96,876 + Atu0092 0.29 -0.4
96,939 - Atu0092 0.34 -0.7
96,946 + Atu0092 0.35 -1.2
96,946 + Atu0092 0.35 +0.4
96,951 + Atu0092 0.35 -0.1
96,954 - Atu0092 0.35 -0.5
96,954 - Atu0092 0.35 -1.2
96,959 - Atu0092 0.36 -0.9
96,959 - Atu0092 0.36 -0.1
97,035 + Atu0092 0.42 +0.3
97,035 + Atu0092 0.42 -0.3
97,113 - Atu0092 0.48 -0.1
97,216 - Atu0092 0.56 -1.2
97,217 + Atu0092 0.56 +0.0
97,241 + Atu0092 0.58 -0.3
97,398 + Atu0092 0.70 -1.8
97,406 - Atu0092 0.71 -0.7
97,406 - Atu0092 0.71 -0.2
97,443 + Atu0092 0.74 +0.1
97,521 + Atu0092 0.80 -0.0
97,569 - Atu0092 0.84 +0.0
97,657 - -0.6
97,709 - -1.3
97,709 - -0.4
97,791 + -0.0
97,804 + -1.4
97,841 + +0.4
97,852 + +1.4
98,002 + Atu0093 0.32 +0.8
98,026 + Atu0093 0.36 -1.2
98,076 + Atu0093 0.44 +0.1
98,076 + Atu0093 0.44 -0.0
98,094 - Atu0093 0.47 +1.3
98,098 - Atu0093 0.48 +0.1
98,194 - Atu0093 0.64 +0.1
98,231 + Atu0093 0.70 +0.1
98,245 - Atu0093 0.72 +0.3
98,249 + Atu0093 0.73 -1.0
98,249 + Atu0093 0.73 -0.2
98,466 - +0.1
98,489 + +0.3
98,489 + +0.9
98,616 + Atu0094 0.23 -0.1
98,616 + Atu0094 0.23 +0.5
98,624 - Atu0094 0.25 +0.0
98,653 + Atu0094 0.29 -0.2
98,682 + Atu0094 0.34 +0.3
98,690 - Atu0094 0.35 -0.5
98,770 + Atu0094 0.48 +0.2

Or see this region's nucleotide sequence