Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4813

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4812 and PfGW456L13_4813 are separated by 106 nucleotidesPfGW456L13_4813 and PfGW456L13_4814 overlap by 1 nucleotides PfGW456L13_4812 - tRNA (5-methoxyuridine) 34 synthase, at 5,372,593 to 5,373,549 _4812 PfGW456L13_4813 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 5,373,656 to 5,374,153 _4813 PfGW456L13_4814 - Multicopper oxidase, at 5,374,153 to 5,375,529 _4814 Position (kb) 5373 5374 5375Strain fitness (log2 ratio) -3 -2 -1 0 1at 5372.823 kb on + strand, within PfGW456L13_4812at 5372.823 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.986 kb on + strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5372.987 kb on - strand, within PfGW456L13_4812at 5373.079 kb on + strand, within PfGW456L13_4812at 5373.079 kb on + strand, within PfGW456L13_4812at 5373.179 kb on - strand, within PfGW456L13_4812at 5373.179 kb on - strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.451 kb on + strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.452 kb on - strand, within PfGW456L13_4812at 5373.563 kb on - strandat 5373.563 kb on - strandat 5373.563 kb on - strandat 5373.605 kb on + strandat 5373.606 kb on - strandat 5373.639 kb on + strandat 5373.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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5,372,823 + PfGW456L13_4812 0.24 -0.8
5,372,823 + PfGW456L13_4812 0.24 +0.1
5,372,986 + PfGW456L13_4812 0.41 -0.4
5,372,986 + PfGW456L13_4812 0.41 -0.0
5,372,986 + PfGW456L13_4812 0.41 +0.0
5,372,986 + PfGW456L13_4812 0.41 -0.3
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 -0.5
5,372,986 + PfGW456L13_4812 0.41 +0.5
5,372,986 + PfGW456L13_4812 0.41 +0.2
5,372,986 + PfGW456L13_4812 0.41 -0.4
5,372,986 + PfGW456L13_4812 0.41 -0.2
5,372,986 + PfGW456L13_4812 0.41 +0.4
5,372,986 + PfGW456L13_4812 0.41 +0.5
5,372,986 + PfGW456L13_4812 0.41 +0.6
5,372,986 + PfGW456L13_4812 0.41 +0.5
5,372,986 + PfGW456L13_4812 0.41 +0.2
5,372,986 + PfGW456L13_4812 0.41 +0.4
5,372,986 + PfGW456L13_4812 0.41 -1.9
5,372,986 + PfGW456L13_4812 0.41 -0.1
5,372,986 + PfGW456L13_4812 0.41 +1.2
5,372,986 + PfGW456L13_4812 0.41 +0.3
5,372,986 + PfGW456L13_4812 0.41 +0.9
5,372,986 + PfGW456L13_4812 0.41 +0.2
5,372,987 - PfGW456L13_4812 0.41 +0.0
5,372,987 - PfGW456L13_4812 0.41 -0.8
5,372,987 - PfGW456L13_4812 0.41 +0.5
5,372,987 - PfGW456L13_4812 0.41 -0.0
5,372,987 - PfGW456L13_4812 0.41 -2.9
5,372,987 - PfGW456L13_4812 0.41 +0.5
5,372,987 - PfGW456L13_4812 0.41 +0.1
5,372,987 - PfGW456L13_4812 0.41 +0.1
5,372,987 - PfGW456L13_4812 0.41 -0.5
5,372,987 - PfGW456L13_4812 0.41 +0.2
5,372,987 - PfGW456L13_4812 0.41 -0.3
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 -0.2
5,372,987 - PfGW456L13_4812 0.41 -2.5
5,372,987 - PfGW456L13_4812 0.41 -0.2
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 +0.4
5,372,987 - PfGW456L13_4812 0.41 -0.3
5,372,987 - PfGW456L13_4812 0.41 +0.4
5,372,987 - PfGW456L13_4812 0.41 -1.2
5,372,987 - PfGW456L13_4812 0.41 +0.5
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 -0.1
5,372,987 - PfGW456L13_4812 0.41 -0.5
5,372,987 - PfGW456L13_4812 0.41 -1.0
5,372,987 - PfGW456L13_4812 0.41 +0.1
5,373,079 + PfGW456L13_4812 0.51 +0.6
5,373,079 + PfGW456L13_4812 0.51 +0.4
5,373,179 - PfGW456L13_4812 0.61 -1.1
5,373,179 - PfGW456L13_4812 0.61 -1.1
5,373,451 + PfGW456L13_4812 0.90 -0.5
5,373,451 + PfGW456L13_4812 0.90 +0.3
5,373,451 + PfGW456L13_4812 0.90 +0.7
5,373,452 - PfGW456L13_4812 0.90 +0.2
5,373,452 - PfGW456L13_4812 0.90 +0.1
5,373,452 - PfGW456L13_4812 0.90 -0.7
5,373,563 - +0.2
5,373,563 - -0.1
5,373,563 - -0.2
5,373,605 + +0.2
5,373,606 - +0.9
5,373,639 + -0.1
5,373,640 - -0.9

Or see this region's nucleotide sequence