Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1369

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1368 and PfGW456L13_1369 are separated by 117 nucleotidesPfGW456L13_1369 and PfGW456L13_1370 are separated by 217 nucleotidesPfGW456L13_1370 and PfGW456L13_1371 are separated by 209 nucleotides PfGW456L13_1368 - Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13), at 1,512,394 to 1,513,278 _1368 PfGW456L13_1369 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 1,513,396 to 1,514,562 _1369 PfGW456L13_1370 - FIG00957593: hypothetical protein, at 1,514,780 to 1,514,944 _1370 PfGW456L13_1371 - DNA polymerase III delta subunit (EC 2.7.7.7), at 1,515,154 to 1,516,191 _1371 Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1512.472 kb on + strandat 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.782 kb on + strand, within PfGW456L13_1368at 1512.786 kb on + strand, within PfGW456L13_1368at 1512.787 kb on - strand, within PfGW456L13_1368at 1513.397 kb on + strandat 1513.529 kb on + strand, within PfGW456L13_1369at 1513.529 kb on + strand, within PfGW456L13_1369at 1513.529 kb on + strand, within PfGW456L13_1369at 1513.530 kb on - strand, within PfGW456L13_1369at 1513.546 kb on + strand, within PfGW456L13_1369at 1513.547 kb on - strand, within PfGW456L13_1369at 1513.605 kb on + strand, within PfGW456L13_1369at 1513.664 kb on + strandat 1513.664 kb on + strand, within PfGW456L13_1369at 1513.665 kb on - strand, within PfGW456L13_1369at 1513.665 kb on - strand, within PfGW456L13_1369at 1513.682 kb on + strand, within PfGW456L13_1369at 1513.682 kb on + strand, within PfGW456L13_1369at 1513.682 kb on + strand, within PfGW456L13_1369at 1513.682 kb on + strand, within PfGW456L13_1369at 1513.683 kb on - strand, within PfGW456L13_1369at 1513.683 kb on - strand, within PfGW456L13_1369at 1513.683 kb on - strand, within PfGW456L13_1369at 1513.683 kb on - strand, within PfGW456L13_1369at 1513.683 kb on - strand, within PfGW456L13_1369at 1513.747 kb on + strand, within PfGW456L13_1369at 1513.747 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.861 kb on + strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.862 kb on - strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.865 kb on + strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.866 kb on - strand, within PfGW456L13_1369at 1513.937 kb on + strand, within PfGW456L13_1369at 1513.937 kb on + strand, within PfGW456L13_1369at 1513.938 kb on - strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.024 kb on + strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.025 kb on - strand, within PfGW456L13_1369at 1514.165 kb on + strand, within PfGW456L13_1369at 1514.166 kb on - strand, within PfGW456L13_1369at 1514.363 kb on + strand, within PfGW456L13_1369at 1514.364 kb on - strand, within PfGW456L13_1369at 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.686 kb on + strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.687 kb on - strandat 1514.735 kb on + strandat 1514.735 kb on + strandat 1514.746 kb on + strandat 1514.755 kb on + strandat 1514.756 kb on - strandat 1514.756 kb on - strandat 1514.796 kb on + strandat 1514.796 kb on + strandat 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.797 kb on - strand, within PfGW456L13_1370at 1514.839 kb on - strand, within PfGW456L13_1370at 1515.009 kb on + strandat 1515.009 kb on + strandat 1515.009 kb on + strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.010 kb on - strandat 1515.018 kb on + strandat 1515.018 kb on + strandat 1515.018 kb on - strandat 1515.019 kb on - strandat 1515.019 kb on - strandat 1515.140 kb on + strandat 1515.141 kb on - strandat 1515.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,512,472 + -1.7
1,512,782 + PfGW456L13_1368 0.44 -3.4
1,512,782 + PfGW456L13_1368 0.44 -3.5
1,512,782 + PfGW456L13_1368 0.44 -3.0
1,512,782 + PfGW456L13_1368 0.44 -2.4
1,512,782 + PfGW456L13_1368 0.44 -2.7
1,512,782 + PfGW456L13_1368 0.44 -4.3
1,512,782 + PfGW456L13_1368 0.44 -2.9
1,512,786 + PfGW456L13_1368 0.44 -3.7
1,512,787 - PfGW456L13_1368 0.44 -2.7
1,513,397 + +0.2
1,513,529 + PfGW456L13_1369 0.11 -0.2
1,513,529 + PfGW456L13_1369 0.11 +0.6
1,513,529 + PfGW456L13_1369 0.11 -1.2
1,513,530 - PfGW456L13_1369 0.11 -0.6
1,513,546 + PfGW456L13_1369 0.13 +0.7
1,513,547 - PfGW456L13_1369 0.13 +0.0
1,513,605 + PfGW456L13_1369 0.18 +0.4
1,513,664 + -0.5
1,513,664 + PfGW456L13_1369 0.23 -0.0
1,513,665 - PfGW456L13_1369 0.23 -1.0
1,513,665 - PfGW456L13_1369 0.23 +0.8
1,513,682 + PfGW456L13_1369 0.25 +1.1
1,513,682 + PfGW456L13_1369 0.25 -0.6
1,513,682 + PfGW456L13_1369 0.25 -0.8
1,513,682 + PfGW456L13_1369 0.25 -0.3
1,513,683 - PfGW456L13_1369 0.25 +0.5
1,513,683 - PfGW456L13_1369 0.25 -0.3
1,513,683 - PfGW456L13_1369 0.25 +0.2
1,513,683 - PfGW456L13_1369 0.25 +0.1
1,513,683 - PfGW456L13_1369 0.25 +0.2
1,513,747 + PfGW456L13_1369 0.30 -0.7
1,513,747 + PfGW456L13_1369 0.30 -0.2
1,513,861 + PfGW456L13_1369 0.40 -0.5
1,513,861 + PfGW456L13_1369 0.40 -0.4
1,513,861 + PfGW456L13_1369 0.40 -0.6
1,513,861 + PfGW456L13_1369 0.40 -0.1
1,513,861 + PfGW456L13_1369 0.40 +0.4
1,513,862 - PfGW456L13_1369 0.40 -0.3
1,513,862 - PfGW456L13_1369 0.40 +0.9
1,513,862 - PfGW456L13_1369 0.40 -0.2
1,513,862 - PfGW456L13_1369 0.40 +0.2
1,513,862 - PfGW456L13_1369 0.40 -0.6
1,513,862 - PfGW456L13_1369 0.40 +0.5
1,513,865 + PfGW456L13_1369 0.40 -0.4
1,513,865 + PfGW456L13_1369 0.40 +0.7
1,513,865 + PfGW456L13_1369 0.40 -0.4
1,513,865 + PfGW456L13_1369 0.40 +0.0
1,513,865 + PfGW456L13_1369 0.40 +0.5
1,513,865 + PfGW456L13_1369 0.40 -0.6
1,513,865 + PfGW456L13_1369 0.40 -0.6
1,513,865 + PfGW456L13_1369 0.40 -0.2
1,513,865 + PfGW456L13_1369 0.40 +0.3
1,513,865 + PfGW456L13_1369 0.40 +0.8
1,513,865 + PfGW456L13_1369 0.40 -0.5
1,513,866 - PfGW456L13_1369 0.40 -0.3
1,513,866 - PfGW456L13_1369 0.40 +0.6
1,513,866 - PfGW456L13_1369 0.40 +0.9
1,513,866 - PfGW456L13_1369 0.40 -0.9
1,513,866 - PfGW456L13_1369 0.40 -0.6
1,513,866 - PfGW456L13_1369 0.40 -0.1
1,513,866 - PfGW456L13_1369 0.40 -0.3
1,513,937 + PfGW456L13_1369 0.46 -1.3
1,513,937 + PfGW456L13_1369 0.46 -1.5
1,513,938 - PfGW456L13_1369 0.46 +0.1
1,514,024 + PfGW456L13_1369 0.54 +0.5
1,514,024 + PfGW456L13_1369 0.54 -0.6
1,514,024 + PfGW456L13_1369 0.54 -0.4
1,514,024 + PfGW456L13_1369 0.54 -0.7
1,514,024 + PfGW456L13_1369 0.54 -0.8
1,514,024 + PfGW456L13_1369 0.54 +0.4
1,514,024 + PfGW456L13_1369 0.54 -0.1
1,514,024 + PfGW456L13_1369 0.54 +0.4
1,514,024 + PfGW456L13_1369 0.54 +0.4
1,514,024 + PfGW456L13_1369 0.54 -0.4
1,514,024 + PfGW456L13_1369 0.54 +0.7
1,514,025 - PfGW456L13_1369 0.54 -0.1
1,514,025 - PfGW456L13_1369 0.54 -1.6
1,514,025 - PfGW456L13_1369 0.54 -0.3
1,514,025 - PfGW456L13_1369 0.54 -0.1
1,514,025 - PfGW456L13_1369 0.54 +0.1
1,514,025 - PfGW456L13_1369 0.54 -0.6
1,514,025 - PfGW456L13_1369 0.54 +0.1
1,514,165 + PfGW456L13_1369 0.66 -0.1
1,514,166 - PfGW456L13_1369 0.66 +0.1
1,514,363 + PfGW456L13_1369 0.83 -1.6
1,514,364 - PfGW456L13_1369 0.83 -1.5
1,514,686 + -0.5
1,514,686 + -0.2
1,514,686 + +0.3
1,514,686 + -0.6
1,514,687 - +0.3
1,514,687 - +0.3
1,514,687 - +2.3
1,514,687 - -0.1
1,514,687 - -0.6
1,514,735 + +0.4
1,514,735 + +0.7
1,514,746 + +0.9
1,514,755 + +0.2
1,514,756 - +0.4
1,514,756 - +0.8
1,514,796 + -0.2
1,514,796 + +0.3
1,514,797 - PfGW456L13_1370 0.10 -0.2
1,514,797 - PfGW456L13_1370 0.10 +1.9
1,514,797 - PfGW456L13_1370 0.10 +1.3
1,514,797 - PfGW456L13_1370 0.10 -1.4
1,514,839 - PfGW456L13_1370 0.36 +0.1
1,515,009 + +0.4
1,515,009 + -0.4
1,515,009 + +0.6
1,515,010 - +0.1
1,515,010 - +2.1
1,515,010 - +0.4
1,515,010 - +0.5
1,515,018 + -1.4
1,515,018 + +1.2
1,515,018 - -0.7
1,515,019 - +0.6
1,515,019 - -1.1
1,515,140 + -0.2
1,515,141 - -0.8
1,515,155 + +1.2

Or see this region's nucleotide sequence