Strain Fitness in Pseudomonas sp. RS175 around PFR28_04487

Experiment: 4-Hydroxybenzoic Acid (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C) 2.5 mM
5,111,240	-				+0.6
5,111,246	-				+0.2
5,111,261	-				+1.8
5,111,335	+		PFR28_04486	0.12	-0.1
5,111,335	+		PFR28_04486	0.12	-2.5
5,111,335	+		PFR28_04486	0.12	-2.0
5,111,335	+		PFR28_04486	0.12	-0.8
5,111,335	+		PFR28_04486	0.12	-1.5
5,111,335	+		PFR28_04486	0.12	-1.0
5,111,335	+		PFR28_04486	0.12	+0.9
5,111,335	+		PFR28_04486	0.12	-0.4
5,111,335	+		PFR28_04486	0.12	-2.7
5,111,335	+		PFR28_04486	0.12	-2.2
5,111,335	+		PFR28_04486	0.12	-2.1
5,111,335	+		PFR28_04486	0.12	-2.3
5,111,335	+		PFR28_04486	0.12	-0.3
5,111,335	+		PFR28_04486	0.12	-1.3
5,111,335	+		PFR28_04486	0.12	+1.5
5,111,335	+		PFR28_04486	0.12	-3.6
5,111,335	+		PFR28_04486	0.12	-1.1
5,111,335	+		PFR28_04486	0.12	+0.3
5,111,335	+		PFR28_04486	0.12	-3.2
5,111,335	+		PFR28_04486	0.12	-2.7
5,111,335	+		PFR28_04486	0.12	-1.7
5,111,335	+		PFR28_04486	0.12	-1.0
5,111,336	-		PFR28_04486	0.12	-0.5
5,111,336	-		PFR28_04486	0.12	-4.1
5,111,336	-		PFR28_04486	0.12	-2.1
5,111,336	-		PFR28_04486	0.12	-1.9
5,111,336	-		PFR28_04486	0.12	-0.4
5,111,336	-		PFR28_04486	0.12	-2.9
5,111,336	-		PFR28_04486	0.12	-2.0
5,111,336	-		PFR28_04486	0.12	+0.0
5,111,336	-		PFR28_04486	0.12	-0.9
5,111,336	-		PFR28_04486	0.12	-0.7
5,111,336	-		PFR28_04486	0.12	-1.1
5,111,336	-		PFR28_04486	0.12	-0.0
5,111,336	-		PFR28_04486	0.12	-1.4
5,111,336	-		PFR28_04486	0.12	-3.1
5,111,336	-		PFR28_04486	0.12	-1.7
5,111,336	-		PFR28_04486	0.12	+1.1
5,111,336	-		PFR28_04486	0.12	-0.9
5,111,336	-		PFR28_04486	0.12	-1.3
5,111,336	-		PFR28_04486	0.12	+0.6
5,111,350	+		PFR28_04486	0.13	-0.5
5,111,350	+		PFR28_04486	0.13	-0.9
5,111,351	-		PFR28_04486	0.14	+3.0
5,111,422	+		PFR28_04486	0.22	+0.9
5,111,422	+		PFR28_04486	0.22	-1.5
5,111,423	-		PFR28_04486	0.22	-0.5
5,111,423	-		PFR28_04486	0.22	+0.1
5,111,490	+		PFR28_04486	0.30	-0.1
5,111,490	+		PFR28_04486	0.30	-1.5
5,111,490	+		PFR28_04486	0.30	-1.6
5,111,490	+		PFR28_04486	0.30	+0.0
5,111,490	+		PFR28_04486	0.30	-0.9
5,111,491	-		PFR28_04486	0.30	-0.6
5,111,637	+		PFR28_04486	0.48	-1.7
5,111,638	-		PFR28_04486	0.48	-2.9
5,111,689	+		PFR28_04486	0.54	-0.5
5,111,689	+		PFR28_04486	0.54	+0.2
5,111,689	+		PFR28_04486	0.54	-1.5
5,111,689	+		PFR28_04486	0.54	+0.5
5,111,690	-		PFR28_04486	0.54	-1.6
5,111,773	+		PFR28_04486	0.64	-1.1
5,111,774	-		PFR28_04486	0.64	+0.7
5,111,774	-		PFR28_04486	0.64	-1.7
5,111,774	-		PFR28_04486	0.64	-2.9
5,111,788	+		PFR28_04486	0.66	-2.2
5,111,933	-		PFR28_04486	0.83	-1.7
5,111,933	-		PFR28_04486	0.83	-1.4
5,111,953	+		PFR28_04486	0.86	+0.1
5,111,954	-		PFR28_04486	0.86	-3.9
5,111,954	-		PFR28_04486	0.86	-0.7
5,112,053	+				+0.1
5,112,053	+				+0.5
5,112,053	+				-0.3
5,112,053	+				-2.5
5,112,053	+				-0.8
5,112,053	+				+0.5
5,112,053	+				-2.6
5,112,053	+				-0.5
5,112,053	+				-1.2
5,112,053	+				+0.5
5,112,053	+				+1.5
5,112,053	+				-1.3
5,112,053	+				+0.7
5,112,053	+				-2.1
5,112,053	+				-1.4
5,112,053	+				-0.1
5,112,053	+				-1.5
5,112,053	+				+1.5
5,112,053	+				-1.1
5,112,053	+				-2.9
5,112,053	+				-1.2
5,112,054	-				-0.7
5,112,054	-				-0.2
5,112,054	-				-0.2
5,112,054	-				-0.2
5,112,054	-				+0.5
5,112,054	-				-1.7
5,112,054	-				-0.0
5,112,054	-				-0.1
5,112,054	-				-2.0
5,112,054	-				-0.7
5,112,054	-				-2.9
5,112,054	-				+0.8
5,112,054	-				-1.5
5,112,054	-				-1.3
5,112,054	-				-4.5
5,112,054	-				-1.4
5,112,054	-				-2.0
5,112,054	-				-2.6
5,112,054	-				-0.4
5,112,054	-				+0.3
5,112,088	+				+0.5
5,112,194	+				-1.1
5,112,207	+				+0.1
5,112,207	+				+0.1
5,112,207	+				+0.6
5,112,215	+				+0.8
5,112,215	+				-0.4
5,112,215	+				-0.7
5,112,216	-				-1.4
5,112,229	+				+0.9
5,112,229	+				-0.1
5,112,229	+				-0.7
5,112,229	+				-1.0
5,112,229	+				-0.1
5,112,230	-				+0.2
5,112,230	-				+0.4
5,112,230	-				-0.3
5,112,230	-				+1.3
5,112,230	-				-1.2
5,112,230	-				-0.2
5,112,230	-				-1.9
5,112,230	-				+2.2
5,112,364	+				-0.7
5,112,364	+				-2.1
5,112,364	+				-3.2
5,112,364	+				-1.0
5,112,364	+				+0.5
5,112,364	+				-2.1
5,112,364	+				-2.2
5,112,364	+				-0.9
5,112,365	-				-0.9
5,112,365	-				+0.4
5,112,365	-				-2.6
5,112,365	-				-1.5
5,112,365	-				-0.7
5,112,365	-				-1.9
5,112,368	+				-0.9
5,112,368	+				-1.9
5,112,368	+				-1.7
5,112,368	+				-3.8
5,112,368	+				-1.2
5,112,368	+				-3.5
5,112,368	+				-0.6
5,112,369	-				-1.8
5,112,369	-				-0.1
5,112,369	-				-0.3
5,112,369	-				-0.1
5,112,415	+		PFR28_04487	0.12	+0.8
5,112,415	+		PFR28_04487	0.12	+0.9
5,112,415	+		PFR28_04487	0.12	+0.7
5,112,415	+		PFR28_04487	0.12	-0.6
5,112,416	-		PFR28_04487	0.12	-2.0
5,112,419	+		PFR28_04487	0.13	-3.5
5,112,419	+		PFR28_04487	0.13	-1.7
5,112,420	-		PFR28_04487	0.13	-0.9
5,112,769	+		PFR28_04487	0.33	+0.1
5,112,769	+		PFR28_04487	0.33	-4.3
5,112,770	-		PFR28_04487	0.34	-0.1
5,112,886	+		PFR28_04487	0.40	-0.5
5,112,886	+		PFR28_04487	0.40	-1.4
5,112,886	+		PFR28_04487	0.40	-1.3
5,112,886	+		PFR28_04487	0.40	-0.2
5,112,887	-		PFR28_04487	0.41	-0.8
5,112,887	-		PFR28_04487	0.41	-0.7
5,112,887	-		PFR28_04487	0.41	-0.5
5,112,887	-		PFR28_04487	0.41	-0.6
5,112,888	+		PFR28_04487	0.41	-3.1
5,112,888	+		PFR28_04487	0.41	-0.3
5,112,888	+		PFR28_04487	0.41	-0.2
5,112,888	+		PFR28_04487	0.41	-0.0
5,112,889	-		PFR28_04487	0.41	-1.6
5,112,889	-		PFR28_04487	0.41	-1.3
5,112,889	-		PFR28_04487	0.41	-1.1
5,112,889	-		PFR28_04487	0.41	+1.1
5,112,889	-		PFR28_04487	0.41	+0.6
5,113,033	+		PFR28_04487	0.49	-0.5
5,113,033	+		PFR28_04487	0.49	-2.1
5,113,033	+		PFR28_04487	0.49	-0.2
5,113,033	+		PFR28_04487	0.49	-2.3
5,113,033	+		PFR28_04487	0.49	-1.9
5,113,033	+		PFR28_04487	0.49	-4.4
5,113,034	-		PFR28_04487	0.49	-1.1
5,113,034	-		PFR28_04487	0.49	-3.0
5,113,056	-		PFR28_04487	0.51	-1.0
5,113,056	-		PFR28_04487	0.51	-2.7
5,113,075	+		PFR28_04487	0.52	-1.9
5,113,075	+		PFR28_04487	0.52	-1.4
5,113,196	-		PFR28_04487	0.59	-1.6
5,113,196	-		PFR28_04487	0.59	-1.2
5,113,456	+		PFR28_04487	0.75	+0.8
5,113,456	+		PFR28_04487	0.75	-2.5
5,113,457	-		PFR28_04487	0.75	+0.2
5,113,569	-		PFR28_04487	0.81	-0.6
5,113,714	+				-1.2
5,113,714	+				-1.5
5,113,714	+				-2.1
5,113,714	+				-1.3
5,113,714	+				-1.6
5,113,715	-				+0.3
5,113,715	-				+0.2
5,113,715	-				-1.2
5,113,715	-				-0.5
5,113,715	-				+2.5
5,113,715	-				-1.9
5,113,888	+				+0.6
5,113,888	+				-0.9
5,113,889	-				-3.0
5,113,889	-				-1.1
5,113,889	-				+0.8
5,113,910	-				+0.7
5,114,103	-				-0.7
5,114,269	-		PFR28_04488	0.16	-3.3
5,114,277	+		PFR28_04488	0.17	-1.3
5,114,299	+		PFR28_04488	0.18	-0.4
5,114,299	+		PFR28_04488	0.18	-1.4
5,114,299	+		PFR28_04488	0.18	-2.0
5,114,300	-		PFR28_04488	0.18	-0.3
5,114,300	-		PFR28_04488	0.18	-1.5
5,114,300	-		PFR28_04488	0.18	+4.5
5,114,362	+		PFR28_04488	0.20	-1.4
5,114,362	+		PFR28_04488	0.20	-0.6
5,114,362	+		PFR28_04488	0.20	-1.5
5,114,362	+		PFR28_04488	0.20	-2.0
5,114,362	+		PFR28_04488	0.20	-1.0
5,114,362	+		PFR28_04488	0.20	-1.1
5,114,362	+		PFR28_04488	0.20	-2.5
5,114,362	+		PFR28_04488	0.20	-2.6
5,114,363	-		PFR28_04488	0.20	+0.6
5,114,363	-		PFR28_04488	0.20	-1.1
5,114,363	-		PFR28_04488	0.20	-0.9
5,114,363	-		PFR28_04488	0.20	-0.8
5,114,363	-		PFR28_04488	0.20	-0.9
5,114,363	-		PFR28_04488	0.20	-4.2
5,114,428	+		PFR28_04488	0.23	+1.1
5,114,429	-		PFR28_04488	0.23	+0.5
5,114,429	-		PFR28_04488	0.23	-3.2
5,114,440	+		PFR28_04488	0.24	-2.0
5,114,440	+		PFR28_04488	0.24	-0.1
5,114,440	+		PFR28_04488	0.24	-0.7
5,114,441	-		PFR28_04488	0.24	-2.7
5,114,441	-		PFR28_04488	0.24	-1.8
5,114,441	-		PFR28_04488	0.24	-0.1
5,114,441	-		PFR28_04488	0.24	-1.4
5,114,441	-		PFR28_04488	0.24	-0.5
5,114,441	-		PFR28_04488	0.24	-1.3
5,114,594	+		PFR28_04488	0.31	+1.5
5,114,595	-		PFR28_04488	0.31	+1.5
5,114,595	-		PFR28_04488	0.31	-1.5
5,114,595	-		PFR28_04488	0.31	-1.6
5,114,595	-		PFR28_04488	0.31	-1.3
5,114,617	+		PFR28_04488	0.32	-2.2
5,114,617	+		PFR28_04488	0.32	-2.1
5,114,618	-		PFR28_04488	0.32	-0.6
5,114,725	+		PFR28_04488	0.36	-1.6
5,114,726	-		PFR28_04488	0.36	-2.0
5,114,726	-		PFR28_04488	0.36	-1.2
5,114,735	-		PFR28_04488	0.37	-0.6
5,114,735	-		PFR28_04488	0.37	-0.6
5,114,735	-		PFR28_04488	0.37	-0.7
5,114,735	-		PFR28_04488	0.37	-1.7
5,114,779	+		PFR28_04488	0.39	-1.8
5,114,779	+		PFR28_04488	0.39	-0.8
5,114,780	-		PFR28_04488	0.39	-0.7
5,114,869	+		PFR28_04488	0.43	+0.5
5,114,869	+		PFR28_04488	0.43	-1.1
5,114,869	+		PFR28_04488	0.43	-0.9
5,114,869	+		PFR28_04488	0.43	-1.3
5,114,869	+		PFR28_04488	0.43	-2.6
5,114,869	+		PFR28_04488	0.43	+1.0
5,114,869	+		PFR28_04488	0.43	-2.1
5,114,870	-		PFR28_04488	0.43	-0.6
5,114,870	-		PFR28_04488	0.43	-0.4
5,114,870	-		PFR28_04488	0.43	-1.4
5,114,870	-		PFR28_04488	0.43	-3.4
5,114,870	-		PFR28_04488	0.43	-1.0
5,114,870	-		PFR28_04488	0.43	-0.7
5,114,870	-		PFR28_04488	0.43	-1.2
5,114,870	-		PFR28_04488	0.43	-1.1
5,114,870	-		PFR28_04488	0.43	+2.5
5,114,870	-		PFR28_04488	0.43	-0.9
5,114,870	-		PFR28_04488	0.43	-2.4
5,114,870	-		PFR28_04488	0.43	+1.3
5,114,870	-		PFR28_04488	0.43	-1.7
5,114,870	-		PFR28_04488	0.43	-2.0
5,114,873	+		PFR28_04488	0.43	-1.5
5,114,874	-		PFR28_04488	0.43	-1.2
5,114,874	-		PFR28_04488	0.43	-2.7
5,114,874	-		PFR28_04488	0.43	-0.9