Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4451

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4449 and PfGW456L13_4450 are separated by 188 nucleotidesPfGW456L13_4450 and PfGW456L13_4451 are separated by 62 nucleotides PfGW456L13_4449 - FIG00960825: hypothetical protein, at 4,971,865 to 4,972,599 _4449 PfGW456L13_4450 - FIG00953856: hypothetical protein, at 4,972,788 to 4,973,066 _4450 PfGW456L13_4451 - ATP-dependent RNA helicase SrmB, at 4,973,129 to 4,974,469 _4451 Position (kb) 4973 4974 4975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4972.138 kb on + strand, within PfGW456L13_4449at 4972.297 kb on + strand, within PfGW456L13_4449at 4972.297 kb on + strand, within PfGW456L13_4449at 4972.297 kb on + strand, within PfGW456L13_4449at 4972.347 kb on + strand, within PfGW456L13_4449at 4972.348 kb on - strand, within PfGW456L13_4449at 4972.348 kb on - strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.351 kb on + strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.352 kb on - strand, within PfGW456L13_4449at 4972.357 kb on + strand, within PfGW456L13_4449at 4972.357 kb on + strand, within PfGW456L13_4449at 4972.358 kb on - strand, within PfGW456L13_4449at 4972.358 kb on - strand, within PfGW456L13_4449at 4972.437 kb on + strand, within PfGW456L13_4449at 4972.437 kb on + strand, within PfGW456L13_4449at 4972.437 kb on + strand, within PfGW456L13_4449at 4972.438 kb on - strand, within PfGW456L13_4449at 4972.438 kb on - strand, within PfGW456L13_4449at 4972.438 kb on - strand, within PfGW456L13_4449at 4972.438 kb on - strand, within PfGW456L13_4449at 4972.441 kb on + strand, within PfGW456L13_4449at 4972.441 kb on + strand, within PfGW456L13_4449at 4972.441 kb on + strand, within PfGW456L13_4449at 4972.441 kb on + strand, within PfGW456L13_4449at 4972.441 kb on + strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.442 kb on - strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.450 kb on + strand, within PfGW456L13_4449at 4972.451 kb on - strand, within PfGW456L13_4449at 4972.451 kb on - strand, within PfGW456L13_4449at 4972.451 kb on - strand, within PfGW456L13_4449at 4972.451 kb on - strand, within PfGW456L13_4449at 4972.483 kb on + strand, within PfGW456L13_4449at 4972.483 kb on + strand, within PfGW456L13_4449at 4972.483 kb on + strand, within PfGW456L13_4449at 4972.484 kb on - strand, within PfGW456L13_4449at 4972.484 kb on - strand, within PfGW456L13_4449at 4972.484 kb on - strand, within PfGW456L13_4449at 4972.489 kb on + strand, within PfGW456L13_4449at 4972.489 kb on + strand, within PfGW456L13_4449at 4972.489 kb on + strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.490 kb on - strand, within PfGW456L13_4449at 4972.558 kb on + strandat 4972.558 kb on + strandat 4972.558 kb on + strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.559 kb on - strandat 4972.711 kb on + strandat 4972.711 kb on + strandat 4972.711 kb on + strandat 4972.712 kb on - strandat 4973.011 kb on + strand, within PfGW456L13_4450at 4973.067 kb on + strandat 4973.068 kb on - strandat 4973.068 kb on - strandat 4973.080 kb on + strandat 4973.110 kb on - strandat 4973.130 kb on + strandat 4973.130 kb on + strandat 4973.130 kb on + strandat 4973.130 kb on + strandat 4973.130 kb on + strandat 4973.130 kb on + strandat 4973.131 kb on - strandat 4973.337 kb on + strand, within PfGW456L13_4451at 4973.337 kb on + strand, within PfGW456L13_4451at 4973.338 kb on - strand, within PfGW456L13_4451at 4973.338 kb on - strand, within PfGW456L13_4451at 4973.338 kb on - strand, within PfGW456L13_4451at 4973.338 kb on - strand, within PfGW456L13_4451at 4973.490 kb on + strand, within PfGW456L13_4451at 4973.491 kb on - strand, within PfGW456L13_4451at 4973.491 kb on - strand, within PfGW456L13_4451at 4973.543 kb on + strand, within PfGW456L13_4451at 4973.543 kb on + strand, within PfGW456L13_4451at 4973.543 kb on + strand, within PfGW456L13_4451at 4973.544 kb on - strand, within PfGW456L13_4451at 4973.544 kb on - strand, within PfGW456L13_4451at 4973.544 kb on - strand, within PfGW456L13_4451at 4973.544 kb on - strand, within PfGW456L13_4451at 4973.667 kb on + strand, within PfGW456L13_4451at 4973.667 kb on + strand, within PfGW456L13_4451at 4973.668 kb on - strand, within PfGW456L13_4451at 4973.668 kb on - strand, within PfGW456L13_4451at 4973.668 kb on - strand, within PfGW456L13_4451at 4973.691 kb on + strand, within PfGW456L13_4451at 4973.692 kb on - strand, within PfGW456L13_4451at 4973.692 kb on - strand, within PfGW456L13_4451at 4973.695 kb on + strand, within PfGW456L13_4451at 4973.695 kb on + strand, within PfGW456L13_4451at 4973.696 kb on - strand, within PfGW456L13_4451at 4973.696 kb on - strand, within PfGW456L13_4451at 4973.696 kb on - strand, within PfGW456L13_4451at 4973.743 kb on - strand, within PfGW456L13_4451at 4974.323 kb on - strand, within PfGW456L13_4451at 4974.506 kb on + strandat 4974.506 kb on + strandat 4974.507 kb on - strandat 4974.507 kb on - strandat 4974.507 kb on - strandat 4974.548 kb on - strandat 4974.548 kb on - strandat 4974.548 kb on - strandat 4974.548 kb on - strandat 4974.548 kb on - strandat 4974.617 kb on + strandat 4974.617 kb on + strandat 4974.617 kb on + strandat 4974.618 kb on - strandat 4974.676 kb on + strandat 4974.677 kb on - strandat 4974.766 kb on + strandat 4974.766 kb on + strandat 4974.766 kb on + strandat 4974.766 kb on + strandat 4974.766 kb on + strandat 4974.767 kb on - strandat 4974.790 kb on + strandat 4974.790 kb on + strandat 4974.790 kb on + strandat 4974.791 kb on - strandat 4974.791 kb on - strandat 4974.881 kb on + strandat 4974.882 kb on - strandat 4974.882 kb on - strandat 4974.913 kb on - strandat 4974.940 kb on - strandat 4974.973 kb on + strandat 4974.974 kb on - strandat 4975.152 kb on - strandat 4975.152 kb on - strandat 4975.238 kb on - strandat 4975.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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4,972,138 + PfGW456L13_4449 0.37 +0.0
4,972,297 + PfGW456L13_4449 0.59 +0.3
4,972,297 + PfGW456L13_4449 0.59 -3.0
4,972,297 + PfGW456L13_4449 0.59 -0.3
4,972,347 + PfGW456L13_4449 0.66 -1.7
4,972,348 - PfGW456L13_4449 0.66 +0.7
4,972,348 - PfGW456L13_4449 0.66 +0.3
4,972,351 + PfGW456L13_4449 0.66 -0.6
4,972,351 + PfGW456L13_4449 0.66 +0.2
4,972,351 + PfGW456L13_4449 0.66 -1.5
4,972,351 + PfGW456L13_4449 0.66 +0.1
4,972,351 + PfGW456L13_4449 0.66 -0.2
4,972,351 + PfGW456L13_4449 0.66 -0.4
4,972,351 + PfGW456L13_4449 0.66 -0.6
4,972,351 + PfGW456L13_4449 0.66 -0.0
4,972,351 + PfGW456L13_4449 0.66 -2.6
4,972,351 + PfGW456L13_4449 0.66 +0.3
4,972,351 + PfGW456L13_4449 0.66 -0.2
4,972,351 + PfGW456L13_4449 0.66 +0.0
4,972,351 + PfGW456L13_4449 0.66 +0.4
4,972,351 + PfGW456L13_4449 0.66 -0.8
4,972,351 + PfGW456L13_4449 0.66 +0.3
4,972,351 + PfGW456L13_4449 0.66 -0.3
4,972,351 + PfGW456L13_4449 0.66 +0.2
4,972,351 + PfGW456L13_4449 0.66 -0.8
4,972,351 + PfGW456L13_4449 0.66 -0.2
4,972,351 + PfGW456L13_4449 0.66 +1.0
4,972,351 + PfGW456L13_4449 0.66 -0.1
4,972,351 + PfGW456L13_4449 0.66 -0.9
4,972,352 - PfGW456L13_4449 0.66 -2.8
4,972,352 - PfGW456L13_4449 0.66 +0.4
4,972,352 - PfGW456L13_4449 0.66 -0.8
4,972,352 - PfGW456L13_4449 0.66 +0.3
4,972,352 - PfGW456L13_4449 0.66 +0.3
4,972,352 - PfGW456L13_4449 0.66 -0.5
4,972,352 - PfGW456L13_4449 0.66 +1.0
4,972,352 - PfGW456L13_4449 0.66 -0.2
4,972,352 - PfGW456L13_4449 0.66 -0.6
4,972,352 - PfGW456L13_4449 0.66 +0.4
4,972,352 - PfGW456L13_4449 0.66 -0.4
4,972,352 - PfGW456L13_4449 0.66 -0.6
4,972,352 - PfGW456L13_4449 0.66 -0.2
4,972,352 - PfGW456L13_4449 0.66 +0.2
4,972,352 - PfGW456L13_4449 0.66 -0.3
4,972,352 - PfGW456L13_4449 0.66 -0.2
4,972,352 - PfGW456L13_4449 0.66 +1.1
4,972,352 - PfGW456L13_4449 0.66 -0.6
4,972,352 - PfGW456L13_4449 0.66 +0.0
4,972,352 - PfGW456L13_4449 0.66 -0.8
4,972,352 - PfGW456L13_4449 0.66 -1.1
4,972,352 - PfGW456L13_4449 0.66 +1.0
4,972,352 - PfGW456L13_4449 0.66 -0.3
4,972,352 - PfGW456L13_4449 0.66 -0.4
4,972,352 - PfGW456L13_4449 0.66 +0.7
4,972,352 - PfGW456L13_4449 0.66 -1.7
4,972,357 + PfGW456L13_4449 0.67 +0.4
4,972,357 + PfGW456L13_4449 0.67 +0.1
4,972,358 - PfGW456L13_4449 0.67 -0.4
4,972,358 - PfGW456L13_4449 0.67 +0.3
4,972,437 + PfGW456L13_4449 0.78 +0.3
4,972,437 + PfGW456L13_4449 0.78 +0.4
4,972,437 + PfGW456L13_4449 0.78 +0.1
4,972,438 - PfGW456L13_4449 0.78 +0.3
4,972,438 - PfGW456L13_4449 0.78 +0.2
4,972,438 - PfGW456L13_4449 0.78 -0.0
4,972,438 - PfGW456L13_4449 0.78 +0.7
4,972,441 + PfGW456L13_4449 0.78 -1.4
4,972,441 + PfGW456L13_4449 0.78 -0.2
4,972,441 + PfGW456L13_4449 0.78 +1.6
4,972,441 + PfGW456L13_4449 0.78 -0.7
4,972,441 + PfGW456L13_4449 0.78 -0.0
4,972,442 - PfGW456L13_4449 0.79 +0.2
4,972,442 - PfGW456L13_4449 0.79 -0.6
4,972,442 - PfGW456L13_4449 0.79 +0.3
4,972,442 - PfGW456L13_4449 0.79 +0.5
4,972,442 - PfGW456L13_4449 0.79 +1.2
4,972,442 - PfGW456L13_4449 0.79 +0.4
4,972,442 - PfGW456L13_4449 0.79 +0.6
4,972,442 - PfGW456L13_4449 0.79 -0.6
4,972,442 - PfGW456L13_4449 0.79 +0.4
4,972,442 - PfGW456L13_4449 0.79 -0.2
4,972,442 - PfGW456L13_4449 0.79 -0.3
4,972,442 - PfGW456L13_4449 0.79 -0.2
4,972,442 - PfGW456L13_4449 0.79 -0.0
4,972,450 + PfGW456L13_4449 0.80 +0.1
4,972,450 + PfGW456L13_4449 0.80 +0.4
4,972,450 + PfGW456L13_4449 0.80 +0.4
4,972,450 + PfGW456L13_4449 0.80 +0.6
4,972,450 + PfGW456L13_4449 0.80 -0.3
4,972,450 + PfGW456L13_4449 0.80 +0.1
4,972,450 + PfGW456L13_4449 0.80 +0.7
4,972,451 - PfGW456L13_4449 0.80 -0.3
4,972,451 - PfGW456L13_4449 0.80 -0.1
4,972,451 - PfGW456L13_4449 0.80 -1.0
4,972,451 - PfGW456L13_4449 0.80 -0.6
4,972,483 + PfGW456L13_4449 0.84 +0.8
4,972,483 + PfGW456L13_4449 0.84 +0.0
4,972,483 + PfGW456L13_4449 0.84 +0.0
4,972,484 - PfGW456L13_4449 0.84 -0.1
4,972,484 - PfGW456L13_4449 0.84 -0.3
4,972,484 - PfGW456L13_4449 0.84 -1.2
4,972,489 + PfGW456L13_4449 0.85 -0.5
4,972,489 + PfGW456L13_4449 0.85 +1.3
4,972,489 + PfGW456L13_4449 0.85 +2.2
4,972,490 - PfGW456L13_4449 0.85 +0.4
4,972,490 - PfGW456L13_4449 0.85 +1.0
4,972,490 - PfGW456L13_4449 0.85 +0.5
4,972,490 - PfGW456L13_4449 0.85 -1.4
4,972,490 - PfGW456L13_4449 0.85 -0.8
4,972,490 - PfGW456L13_4449 0.85 -0.2
4,972,558 + +0.2
4,972,558 + -0.1
4,972,558 + -1.2
4,972,559 - -1.3
4,972,559 - +0.4
4,972,559 - -1.9
4,972,559 - +1.6
4,972,559 - -2.9
4,972,559 - -0.4
4,972,559 - -1.1
4,972,711 + +0.2
4,972,711 + -1.1
4,972,711 + -0.6
4,972,712 - +0.5
4,973,011 + PfGW456L13_4450 0.80 +0.6
4,973,067 + -0.1
4,973,068 - -2.4
4,973,068 - +0.5
4,973,080 + -1.3
4,973,110 - -0.0
4,973,130 + +0.4
4,973,130 + -0.5
4,973,130 + -1.7
4,973,130 + -0.2
4,973,130 + -0.9
4,973,130 + +0.4
4,973,131 - +0.6
4,973,337 + PfGW456L13_4451 0.16 +0.2
4,973,337 + PfGW456L13_4451 0.16 +0.0
4,973,338 - PfGW456L13_4451 0.16 +0.3
4,973,338 - PfGW456L13_4451 0.16 +0.3
4,973,338 - PfGW456L13_4451 0.16 +0.8
4,973,338 - PfGW456L13_4451 0.16 -0.5
4,973,490 + PfGW456L13_4451 0.27 -0.9
4,973,491 - PfGW456L13_4451 0.27 -1.0
4,973,491 - PfGW456L13_4451 0.27 -2.4
4,973,543 + PfGW456L13_4451 0.31 -0.4
4,973,543 + PfGW456L13_4451 0.31 -0.7
4,973,543 + PfGW456L13_4451 0.31 -0.7
4,973,544 - PfGW456L13_4451 0.31 -1.5
4,973,544 - PfGW456L13_4451 0.31 -1.7
4,973,544 - PfGW456L13_4451 0.31 -0.7
4,973,544 - PfGW456L13_4451 0.31 -1.3
4,973,667 + PfGW456L13_4451 0.40 -0.8
4,973,667 + PfGW456L13_4451 0.40 -0.7
4,973,668 - PfGW456L13_4451 0.40 -1.5
4,973,668 - PfGW456L13_4451 0.40 +0.1
4,973,668 - PfGW456L13_4451 0.40 -1.7
4,973,691 + PfGW456L13_4451 0.42 -1.9
4,973,692 - PfGW456L13_4451 0.42 +0.3
4,973,692 - PfGW456L13_4451 0.42 -1.7
4,973,695 + PfGW456L13_4451 0.42 -1.7
4,973,695 + PfGW456L13_4451 0.42 -0.9
4,973,696 - PfGW456L13_4451 0.42 -0.1
4,973,696 - PfGW456L13_4451 0.42 -2.9
4,973,696 - PfGW456L13_4451 0.42 +0.2
4,973,743 - PfGW456L13_4451 0.46 -1.1
4,974,323 - PfGW456L13_4451 0.89 -2.4
4,974,506 + +0.6
4,974,506 + -1.2
4,974,507 - -0.9
4,974,507 - -0.3
4,974,507 - +0.2
4,974,548 - +0.2
4,974,548 - -0.6
4,974,548 - -0.2
4,974,548 - +0.1
4,974,548 - -0.8
4,974,617 + +0.2
4,974,617 + -0.6
4,974,617 + +0.8
4,974,618 - +0.1
4,974,676 + -0.3
4,974,677 - -1.1
4,974,766 + -0.6
4,974,766 + +0.3
4,974,766 + -1.1
4,974,766 + -0.6
4,974,766 + -0.3
4,974,767 - +0.2
4,974,790 + -0.7
4,974,790 + -1.0
4,974,790 + +0.3
4,974,791 - -2.4
4,974,791 - -0.3
4,974,881 + -0.8
4,974,882 - +0.3
4,974,882 - +0.7
4,974,913 - -1.7
4,974,940 - +0.9
4,974,973 + -0.0
4,974,974 - +0.5
4,975,152 - -0.0
4,975,152 - +0.1
4,975,238 - -0.2
4,975,279 - +0.7

Or see this region's nucleotide sequence