Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_298

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_296 and PfGW456L13_297 are separated by 10 nucleotidesPfGW456L13_297 and PfGW456L13_298 are separated by 245 nucleotidesPfGW456L13_298 and PfGW456L13_299 are separated by 155 nucleotidesPfGW456L13_299 and PfGW456L13_300 overlap by 1 nucleotides PfGW456L13_296 - Polyhydroxyalkanoate granule-associated protein PhaF, at 348,452 to 349,288 _296 PfGW456L13_297 - polyhydroxyalkanoate granule-associated protein PhaI, at 349,299 to 349,721 _297 PfGW456L13_298 - FIG00954300: hypothetical protein, at 349,967 to 350,242 _298 PfGW456L13_299 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 350,398 to 351,168 _299 PfGW456L13_300 - Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes, at 351,168 to 351,791 _300 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 349.191 kb on + strandat 349.192 kb on - strand, within PfGW456L13_296at 349.200 kb on - strand, within PfGW456L13_296at 349.392 kb on - strand, within PfGW456L13_297at 349.404 kb on - strand, within PfGW456L13_297at 349.404 kb on - strand, within PfGW456L13_297at 349.404 kb on - strand, within PfGW456L13_297at 349.654 kb on + strand, within PfGW456L13_297at 349.654 kb on + strand, within PfGW456L13_297at 349.710 kb on - strandat 349.787 kb on - strandat 349.825 kb on + strandat 349.825 kb on + strandat 349.825 kb on + strandat 349.825 kb on + strandat 349.826 kb on - strandat 349.826 kb on - strandat 349.826 kb on - strandat 349.826 kb on - strandat 349.826 kb on - strandat 349.955 kb on + strandat 349.955 kb on + strandat 349.956 kb on - strandat 349.982 kb on - strandat 350.148 kb on + strand, within PfGW456L13_298at 350.230 kb on + strandat 350.230 kb on + strandat 350.231 kb on - strandat 350.231 kb on - strandat 350.231 kb on - strandat 350.231 kb on - strandat 350.231 kb on - strandat 350.324 kb on + strandat 350.324 kb on + strandat 350.324 kb on + strandat 350.325 kb on - strandat 350.325 kb on - strandat 350.325 kb on - strandat 350.325 kb on - strandat 350.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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349,191 + +1.1
349,192 - PfGW456L13_296 0.88 -0.3
349,200 - PfGW456L13_296 0.89 -1.0
349,392 - PfGW456L13_297 0.22 +0.6
349,404 - PfGW456L13_297 0.25 +0.6
349,404 - PfGW456L13_297 0.25 -0.0
349,404 - PfGW456L13_297 0.25 +0.4
349,654 + PfGW456L13_297 0.84 -0.6
349,654 + PfGW456L13_297 0.84 +0.6
349,710 - +0.3
349,787 - +0.7
349,825 + +0.5
349,825 + -0.6
349,825 + -0.9
349,825 + +0.0
349,826 - +0.4
349,826 - -0.1
349,826 - +0.5
349,826 - -1.8
349,826 - -1.5
349,955 + +0.0
349,955 + -0.7
349,956 - -0.3
349,982 - +1.2
350,148 + PfGW456L13_298 0.66 -0.8
350,230 + -0.4
350,230 + +0.5
350,231 - +1.0
350,231 - +0.6
350,231 - -0.1
350,231 - -0.7
350,231 - -2.1
350,324 + +0.1
350,324 + -1.3
350,324 + +1.2
350,325 - +0.2
350,325 - +0.8
350,325 - +2.4
350,325 - -0.6
350,325 - -0.4

Or see this region's nucleotide sequence