Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_224

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_223 and PfGW456L13_224 are separated by 257 nucleotidesPfGW456L13_224 and PfGW456L13_225 are separated by 142 nucleotides PfGW456L13_223 - Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 260,482 to 264,432 _223 PfGW456L13_224 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 264,690 to 266,492 _224 PfGW456L13_225 - Methyl-accepting chemotaxis protein, at 266,635 to 268,572 _225 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 263.708 kb on + strand, within PfGW456L13_223at 263.708 kb on + strand, within PfGW456L13_223at 263.708 kb on + strand, within PfGW456L13_223at 263.709 kb on - strand, within PfGW456L13_223at 263.711 kb on + strand, within PfGW456L13_223at 263.776 kb on + strand, within PfGW456L13_223at 264.022 kb on + strand, within PfGW456L13_223at 264.022 kb on + strand, within PfGW456L13_223at 264.022 kb on + strand, within PfGW456L13_223at 264.022 kb on + strand, within PfGW456L13_223at 264.098 kb on + strandat 264.405 kb on + strandat 264.405 kb on + strandat 264.430 kb on + strandat 264.430 kb on + strandat 264.528 kb on + strandat 264.581 kb on - strandat 264.632 kb on + strandat 264.632 kb on + strandat 264.632 kb on + strandat 264.632 kb on + strandat 264.633 kb on - strandat 264.633 kb on - strandat 264.641 kb on + strandat 264.642 kb on - strandat 264.655 kb on + strandat 264.656 kb on - strandat 264.681 kb on + strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.735 kb on + strandat 264.736 kb on - strandat 264.736 kb on - strandat 264.935 kb on - strand, within PfGW456L13_224at 265.005 kb on - strand, within PfGW456L13_224at 265.005 kb on - strand, within PfGW456L13_224at 265.065 kb on + strand, within PfGW456L13_224at 265.066 kb on - strand, within PfGW456L13_224at 265.221 kb on - strand, within PfGW456L13_224at 265.252 kb on - strand, within PfGW456L13_224at 265.252 kb on - strand, within PfGW456L13_224at 265.252 kb on - strand, within PfGW456L13_224at 265.252 kb on - strand, within PfGW456L13_224at 265.376 kb on + strand, within PfGW456L13_224at 265.554 kb on + strand, within PfGW456L13_224at 265.554 kb on + strand, within PfGW456L13_224at 265.554 kb on + strand, within PfGW456L13_224at 265.554 kb on + strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.555 kb on - strand, within PfGW456L13_224at 265.633 kb on - strand, within PfGW456L13_224at 265.633 kb on - strand, within PfGW456L13_224at 265.633 kb on - strand, within PfGW456L13_224at 265.644 kb on + strand, within PfGW456L13_224at 265.759 kb on - strand, within PfGW456L13_224at 265.759 kb on - strand, within PfGW456L13_224at 265.759 kb on - strand, within PfGW456L13_224at 265.867 kb on + strand, within PfGW456L13_224at 265.867 kb on + strand, within PfGW456L13_224at 265.868 kb on - strand, within PfGW456L13_224at 265.953 kb on + strand, within PfGW456L13_224at 265.954 kb on - strand, within PfGW456L13_224at 265.966 kb on - strand, within PfGW456L13_224at 265.966 kb on - strand, within PfGW456L13_224at 265.980 kb on + strand, within PfGW456L13_224at 265.981 kb on - strand, within PfGW456L13_224at 265.981 kb on - strand, within PfGW456L13_224at 265.981 kb on - strand, within PfGW456L13_224at 265.981 kb on - strand, within PfGW456L13_224at 266.367 kb on + strandat 266.367 kb on + strandat 266.367 kb on + strandat 266.367 kb on + strandat 266.367 kb on + strandat 266.368 kb on - strandat 266.368 kb on - strandat 266.368 kb on - strandat 266.368 kb on - strandat 266.369 kb on + strandat 266.369 kb on + strandat 266.394 kb on + strandat 266.510 kb on - strandat 266.510 kb on - strandat 266.622 kb on + strandat 266.622 kb on + strandat 266.622 kb on + strandat 266.623 kb on - strandat 266.625 kb on + strandat 266.626 kb on - strandat 266.626 kb on - strandat 266.626 kb on - strandat 266.626 kb on - strandat 266.626 kb on - strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.631 kb on + strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.632 kb on - strandat 266.856 kb on + strand, within PfGW456L13_225at 266.994 kb on + strand, within PfGW456L13_225at 266.994 kb on + strand, within PfGW456L13_225at 266.994 kb on + strand, within PfGW456L13_225at 266.995 kb on - strand, within PfGW456L13_225at 267.007 kb on - strand, within PfGW456L13_225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
263,708 + PfGW456L13_223 0.82 +0.8
263,708 + PfGW456L13_223 0.82 +0.9
263,708 + PfGW456L13_223 0.82 +1.5
263,709 - PfGW456L13_223 0.82 -1.8
263,711 + PfGW456L13_223 0.82 -1.1
263,776 + PfGW456L13_223 0.83 +0.6
264,022 + PfGW456L13_223 0.90 +2.1
264,022 + PfGW456L13_223 0.90 +0.1
264,022 + PfGW456L13_223 0.90 +1.2
264,022 + PfGW456L13_223 0.90 +1.1
264,098 + +1.4
264,405 + -0.2
264,405 + -0.2
264,430 + +0.1
264,430 + -0.3
264,528 + +0.7
264,581 - -1.0
264,632 + -1.7
264,632 + +0.2
264,632 + -1.0
264,632 + +0.4
264,633 - +1.0
264,633 - +0.0
264,641 + +0.4
264,642 - +0.6
264,655 + +0.3
264,656 - +0.3
264,681 + +0.8
264,735 + -1.4
264,735 + -0.5
264,735 + +1.7
264,736 - +1.8
264,736 - -1.2
264,935 - PfGW456L13_224 0.14 +0.9
265,005 - PfGW456L13_224 0.17 -1.4
265,005 - PfGW456L13_224 0.17 +1.5
265,065 + PfGW456L13_224 0.21 -0.9
265,066 - PfGW456L13_224 0.21 -1.4
265,221 - PfGW456L13_224 0.29 +0.2
265,252 - PfGW456L13_224 0.31 -0.5
265,252 - PfGW456L13_224 0.31 +0.0
265,252 - PfGW456L13_224 0.31 +0.3
265,252 - PfGW456L13_224 0.31 +0.7
265,376 + PfGW456L13_224 0.38 -0.2
265,554 + PfGW456L13_224 0.48 +0.6
265,554 + PfGW456L13_224 0.48 +0.7
265,554 + PfGW456L13_224 0.48 -0.4
265,554 + PfGW456L13_224 0.48 +0.5
265,555 - PfGW456L13_224 0.48 +1.0
265,555 - PfGW456L13_224 0.48 +0.6
265,555 - PfGW456L13_224 0.48 -0.5
265,555 - PfGW456L13_224 0.48 -0.4
265,555 - PfGW456L13_224 0.48 -0.2
265,555 - PfGW456L13_224 0.48 +0.2
265,555 - PfGW456L13_224 0.48 -3.2
265,555 - PfGW456L13_224 0.48 -0.1
265,633 - PfGW456L13_224 0.52 +0.6
265,633 - PfGW456L13_224 0.52 +0.3
265,633 - PfGW456L13_224 0.52 +0.4
265,644 + PfGW456L13_224 0.53 -0.3
265,759 - PfGW456L13_224 0.59 -0.3
265,759 - PfGW456L13_224 0.59 -0.1
265,759 - PfGW456L13_224 0.59 +0.2
265,867 + PfGW456L13_224 0.65 -0.2
265,867 + PfGW456L13_224 0.65 +0.6
265,868 - PfGW456L13_224 0.65 +0.9
265,953 + PfGW456L13_224 0.70 -1.7
265,954 - PfGW456L13_224 0.70 -1.4
265,966 - PfGW456L13_224 0.71 +0.0
265,966 - PfGW456L13_224 0.71 +0.5
265,980 + PfGW456L13_224 0.72 -1.2
265,981 - PfGW456L13_224 0.72 +0.4
265,981 - PfGW456L13_224 0.72 +0.3
265,981 - PfGW456L13_224 0.72 -1.6
265,981 - PfGW456L13_224 0.72 +0.1
266,367 + +1.1
266,367 + +0.3
266,367 + +0.3
266,367 + -1.2
266,367 + -0.4
266,368 - +0.2
266,368 - +1.3
266,368 - +0.1
266,368 - +1.1
266,369 + +0.6
266,369 + +0.1
266,394 + +0.3
266,510 - -0.1
266,510 - -0.0
266,622 + +0.3
266,622 + +0.2
266,622 + +1.6
266,623 - -0.0
266,625 + -0.3
266,626 - +1.0
266,626 - -0.8
266,626 - +0.3
266,626 - +0.8
266,626 - +0.4
266,631 + +0.3
266,631 + +0.8
266,631 + +0.2
266,631 + -0.0
266,631 + +0.2
266,631 + +0.7
266,631 + -0.8
266,631 + -1.8
266,631 + +0.6
266,632 - -0.9
266,632 - -1.1
266,632 - +3.4
266,632 - +0.6
266,632 - -0.0
266,632 - +0.1
266,632 - +0.4
266,632 - +0.1
266,632 - +0.7
266,856 + PfGW456L13_225 0.11 -0.2
266,994 + PfGW456L13_225 0.19 -0.3
266,994 + PfGW456L13_225 0.19 +0.9
266,994 + PfGW456L13_225 0.19 +0.9
266,995 - PfGW456L13_225 0.19 -0.4
267,007 - PfGW456L13_225 0.19 -1.2

Or see this region's nucleotide sequence