Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1716

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1715 and PfGW456L13_1716 are separated by 409 nucleotidesPfGW456L13_1716 and PfGW456L13_1717 are separated by 5 nucleotidesPfGW456L13_1717 and PfGW456L13_1718 are separated by 2 nucleotides PfGW456L13_1715 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 1,890,028 to 1,891,404 _1715 PfGW456L13_1716 - SSU ribosomal protein S16p, at 1,891,814 to 1,892,065 _1716 PfGW456L13_1717 - 16S rRNA processing protein RimM, at 1,892,071 to 1,892,607 _1717 PfGW456L13_1718 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 1,892,610 to 1,893,362 _1718 Position (kb) 1891 1892 1893Strain fitness (log2 ratio) -2 -1 0 1 2at 1891.402 kb on + strandat 1891.421 kb on + strandat 1891.421 kb on + strandat 1891.422 kb on - strandat 1891.486 kb on + strandat 1891.486 kb on + strandat 1891.486 kb on + strandat 1891.486 kb on + strandat 1891.487 kb on - strandat 1891.487 kb on - strandat 1891.487 kb on - strandat 1891.487 kb on - strandat 1891.487 kb on - strandat 1891.535 kb on + strandat 1891.535 kb on + strandat 1891.535 kb on + strandat 1891.536 kb on - strandat 1891.536 kb on - strandat 1891.544 kb on + strandat 1891.545 kb on - strandat 1891.668 kb on + strandat 1891.668 kb on + strandat 1891.668 kb on + strandat 1891.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,891,402 + +0.4
1,891,421 + -0.5
1,891,421 + -0.9
1,891,422 - +0.1
1,891,486 + -0.3
1,891,486 + -0.2
1,891,486 + -0.8
1,891,486 + -0.5
1,891,487 - +1.8
1,891,487 - -0.0
1,891,487 - -0.2
1,891,487 - +1.4
1,891,487 - -0.8
1,891,535 + -0.5
1,891,535 + -0.3
1,891,535 + +0.1
1,891,536 - -0.4
1,891,536 - +0.4
1,891,544 + -0.9
1,891,545 - -0.7
1,891,668 + +0.2
1,891,668 + -0.1
1,891,668 + -2.2
1,891,668 + +0.9

Or see this region's nucleotide sequence