Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1715 and PfGW456L13_1716 are separated by 409 nucleotides PfGW456L13_1716 and PfGW456L13_1717 are separated by 5 nucleotides PfGW456L13_1717 and PfGW456L13_1718 are separated by 2 nucleotides
PfGW456L13_1715 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 1,890,028 to 1,891,404
_1715
PfGW456L13_1716 - SSU ribosomal protein S16p, at 1,891,814 to 1,892,065
_1716
PfGW456L13_1717 - 16S rRNA processing protein RimM, at 1,892,071 to 1,892,607
_1717
PfGW456L13_1718 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 1,892,610 to 1,893,362
_1718
Position (kb)
1891
1892
1893 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1891.402 kb on + strand at 1891.421 kb on + strand at 1891.421 kb on + strand at 1891.422 kb on - strand at 1891.486 kb on + strand at 1891.486 kb on + strand at 1891.486 kb on + strand at 1891.486 kb on + strand at 1891.487 kb on - strand at 1891.487 kb on - strand at 1891.487 kb on - strand at 1891.487 kb on - strand at 1891.487 kb on - strand at 1891.535 kb on + strand at 1891.535 kb on + strand at 1891.535 kb on + strand at 1891.536 kb on - strand at 1891.536 kb on - strand at 1891.544 kb on + strand at 1891.545 kb on - strand at 1891.668 kb on + strand at 1891.668 kb on + strand at 1891.668 kb on + strand at 1891.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 1,891,402 + +0.4 1,891,421 + -0.5 1,891,421 + -0.9 1,891,422 - +0.1 1,891,486 + -0.3 1,891,486 + -0.2 1,891,486 + -0.8 1,891,486 + -0.5 1,891,487 - +1.8 1,891,487 - -0.0 1,891,487 - -0.2 1,891,487 - +1.4 1,891,487 - -0.8 1,891,535 + -0.5 1,891,535 + -0.3 1,891,535 + +0.1 1,891,536 - -0.4 1,891,536 - +0.4 1,891,544 + -0.9 1,891,545 - -0.7 1,891,668 + +0.2 1,891,668 + -0.1 1,891,668 + -2.2 1,891,668 + +0.9
Or see this region's nucleotide sequence