Strain Fitness in Pseudomonas putida KT2440 around PP_t29

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
2,241,268	+				-0.6
2,241,352	+				-2.2
2,241,391	+				+0.6
2,241,762	+				-0.2
2,241,778	+				-1.3
2,241,874	+		PP_t27	0.86	-0.6
2,242,026	+				-0.2
2,242,072	-		PP_t29	0.11	+0.6
2,242,072	-				-1.3
2,242,072	-		PP_t29	0.11	-0.0
2,242,072	-		PP_t29	0.11	-1.6
2,242,129	+		PP_t29	0.86	-0.9
2,242,180	-				-2.2
2,242,284	-				-1.6
2,242,379	-				+0.5
2,242,560	+		PP_1978	0.24	+0.0
2,242,560	+		PP_1978	0.24	+1.2
2,242,560	+		PP_1978	0.24	-1.6
2,242,560	+		PP_1978	0.24	-1.3
2,242,561	-		PP_1978	0.25	+0.8
2,242,561	-		PP_1978	0.25	-0.1
2,242,589	+		PP_1978	0.30	-0.3
2,242,589	+		PP_1978	0.30	+0.3
2,242,589	+		PP_1978	0.30	+1.0
2,242,589	+		PP_1978	0.30	-2.1
2,242,590	-		PP_1978	0.30	-0.8
2,242,590	-		PP_1978	0.30	-2.0
2,242,590	-		PP_1978	0.30	-1.6
2,242,590	-		PP_1978	0.30	-1.0
2,242,695	+		PP_1978	0.49	-1.7
2,242,695	+		PP_1978	0.49	+0.1
2,242,696	-		PP_1978	0.50	+0.7
2,242,726	+		PP_1978	0.55	-2.9
2,242,726	+		PP_1978	0.55	+1.1
2,242,727	-		PP_1978	0.55	-0.4
2,242,988	+				-0.7
2,242,989	-				+0.7
2,242,989	-				-1.2
2,243,139	-		PP_1979	0.18	+0.9
2,243,139	-		PP_1979	0.18	+1.9