Strain Fitness in Pseudomonas putida KT2440 around PP_5712

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,422,644	+				-1.0
5,422,645	-				-2.5
5,422,645	-				-2.7
5,422,733	+				+0.8
5,422,734	-				-0.1
5,422,745	+				-0.5
5,422,746	-				+0.3
5,422,800	-				-0.3
5,422,820	+				-2.7
5,422,820	+				-0.6
5,422,831	+				-0.4
5,423,477	+				-0.6
5,423,478	-				+2.7
5,423,600	-				+0.2
5,423,759	+		PP_5712	0.20	+0.3
5,423,759	+		PP_5712	0.20	+0.2
5,423,995	+		PP_5712	0.55	+2.0
5,424,022	+		PP_5712	0.59	-0.9
5,424,023	-		PP_5712	0.59	-0.8
5,424,198	+		PP_5712	0.84	-1.3
5,424,199	-		PP_5712	0.84	-0.9
5,424,199	-		PP_5712	0.84	-2.2
5,424,283	+				+1.1
5,424,284	-				+0.6
5,424,284	-				-1.3
5,424,303	+				+0.0
5,424,303	+				-0.9
5,424,304	-				-0.5
5,424,304	-				-1.6
5,424,304	-				-0.3
5,424,341	-				-1.7
5,424,341	-				-1.2
5,424,420	+				+1.7
5,424,421	-				-0.9
5,424,432	+				+1.2
5,424,433	-				+0.1
5,424,588	+		PP_4764	0.20	+1.1
5,424,589	-		PP_4764	0.20	+0.5
5,424,600	+		PP_4764	0.22	-1.4
5,424,600	+		PP_4764	0.22	-0.4
5,424,601	-		PP_4764	0.22	-1.4
5,424,772	-		PP_4764	0.40	+1.4
5,425,023	+		PP_4764	0.68	-0.4
5,425,023	+		PP_4764	0.68	+0.5
5,425,023	+		PP_4764	0.68	+0.3
5,425,024	-		PP_4764	0.68	+0.3
5,425,024	-		PP_4764	0.68	-1.0
5,425,053	+		PP_4764	0.71	-0.2
5,425,053	+		PP_4764	0.71	-0.3
5,425,053	+		PP_4764	0.71	-1.0
5,425,068	+		PP_4764	0.73	+0.2
5,425,069	-		PP_4764	0.73	+0.3
5,425,089	+		PP_4764	0.75	-0.3
5,425,090	-		PP_4764	0.75	+0.6
5,425,090	-		PP_4764	0.75	+1.5
5,425,234	-				+0.2
5,425,300	+				-1.0
5,425,300	+				-0.7
5,425,300	+				-0.2
5,425,300	+				-0.1
5,425,301	-				+1.4
5,425,301	-				+0.5