Strain Fitness in Pseudomonas putida KT2440 around PP_5247

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,988,338	+		PP_5246	0.79	+0.9
5,988,379	+		PP_5246	0.82	-0.3
5,988,497	+		PP_5246	0.88	-0.6
5,988,498	-		PP_5246	0.88	-1.4
5,988,498	-		PP_5246	0.88	-0.3
5,988,581	-				+0.4
5,988,735	+				+1.0
5,988,735	+				-0.7
5,988,735	+				+0.5
5,988,736	-				+0.1
5,988,780	-				+0.7
5,988,780	-				+0.4
5,988,780	-				-0.2
5,988,791	+				+0.7
5,988,791	+				+1.1
5,988,791	+				-1.3
5,988,792	-				+0.4
5,988,811	+				+0.8
5,988,811	+				+0.6
5,988,811	+				+0.2
5,988,867	-				+0.1
5,988,923	-				-0.5
5,988,923	-				-1.3
5,988,923	-				+0.8
5,989,076	+				-0.0
5,989,094	+				-1.3
5,989,095	-				-0.4
5,989,095	-				-0.6
5,989,141	+				+0.5
5,989,141	+				+0.1
5,989,141	+				-0.6
5,989,142	-				+0.2
5,989,145	-				-1.7
5,989,146	+				+2.7
5,989,146	+				-0.9
5,989,147	-				-0.9
5,989,195	+				-0.3
5,989,196	-				-0.1
5,989,264	+				+0.9
5,989,477	+		PP_5247	0.47	-1.7
5,989,478	-		PP_5247	0.47	-0.4
5,989,533	+		PP_5247	0.61	-1.0
5,989,534	-		PP_5247	0.61	-0.8
5,989,534	-		PP_5247	0.61	-3.5
5,989,534	-		PP_5247	0.61	-0.9
5,989,548	+		PP_5247	0.65	-0.1
5,989,549	-		PP_5247	0.65	+0.2
5,989,549	-		PP_5247	0.65	-1.9
5,989,560	+		PP_5247	0.68	+0.7
5,989,561	-		PP_5247	0.68	-0.3
5,989,757	-				+0.5
5,989,807	+				-0.7
5,989,807	+				-0.7
5,989,808	-				+0.7
5,989,808	-				+0.4
5,989,813	+				+1.0
5,989,813	+				+0.2
5,989,813	+				+0.1
5,989,813	+				-0.0
5,989,814	-				+0.3
5,989,814	-				+2.0
5,989,814	-				+0.8
5,989,814	-				+0.1
5,989,814	-				+1.1
5,989,851	-				-0.1
5,989,996	+				+1.1
5,989,997	-				+0.6
5,989,997	-				-1.3
5,990,038	+				-2.9
5,990,038	+				+0.0
5,990,038	+				-1.5
5,990,038	+				+0.3
5,990,038	+				-1.3
5,990,039	-				+0.2
5,990,039	-				+0.6
5,990,061	-				-0.1
5,990,061	-				+0.1
5,990,061	-				+1.1
5,990,062	+				-0.6
5,990,062	+				-0.2
5,990,062	+				-0.2
5,990,062	+				+0.3
5,990,063	-				+0.1
5,990,063	-				-0.0
5,990,277	+				+0.1
5,990,422	+		PP_5248	0.61	-1.1
5,990,422	+		PP_5248	0.61	+0.1
5,990,680	-				-0.3
5,990,687	-				-0.4