Strain Fitness in Pseudomonas putida KT2440 around PP_5212

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,943,649	+				-1.2
5,943,774	+		PP_5211	0.17	-0.7
5,943,774	+		PP_5211	0.17	-0.5
5,943,775	-		PP_5211	0.18	+0.4
5,943,853	-		PP_5211	0.32	+0.1
5,943,853	-		PP_5211	0.32	+0.1
5,944,101	+		PP_5211	0.76	+1.9
5,944,101	+		PP_5211	0.76	+0.6
5,944,102	-		PP_5211	0.76	+0.4
5,944,102	-		PP_5211	0.76	-0.9
5,944,124	+		PP_5211	0.80	-0.7
5,944,182	+				+0.8
5,944,258	+				+0.4
5,944,258	+				-0.5
5,944,309	+				+1.0
5,944,310	-				-0.5
5,944,327	+				+0.5
5,944,328	-				+0.5
5,944,328	-				-0.8
5,944,341	+				-0.9
5,944,354	+				+0.1
5,944,354	+				-0.2
5,944,355	-				+0.9
5,944,355	-				-1.1
5,944,363	-				+0.4
5,944,377	-				+1.0
5,944,400	-				-0.0
5,944,423	+				+0.5
5,944,423	+				+0.4
5,944,423	+				+1.1
5,944,423	+				+1.2
5,944,423	+				-1.3
5,944,423	+				-0.5
5,944,423	+				-0.3
5,944,424	-				+0.7
5,944,424	-				+0.8
5,944,424	-				+0.6
5,944,424	-				+0.5
5,944,424	-				-0.0
5,944,443	-				+0.1
5,944,493	+				+0.3
5,944,494	-				+1.5
5,944,494	-				-0.4
5,944,517	+				+1.1
5,944,539	+				+0.7
5,944,547	+				+1.0
5,944,549	+				-1.0
5,944,549	+				+0.6
5,944,549	+				-0.7
5,944,576	-				-2.1
5,944,576	-				+0.2
5,944,659	+				+0.1
5,944,659	+				-1.9
5,944,659	+				-0.3
5,944,659	+				+1.6
5,944,660	-				+0.2
5,944,660	-				+1.0
5,944,660	-				+0.5
5,944,660	-				+1.3
5,944,660	-				+0.8
5,944,660	-				+1.1
5,944,660	-				-0.2
5,944,660	-				-0.2
5,944,686	+		PP_5212	0.12	-0.6
5,944,687	-		PP_5212	0.12	+0.1
5,944,687	-		PP_5212	0.12	-1.8
5,944,699	+		PP_5212	0.13	-0.3
5,944,699	+		PP_5212	0.13	-2.4
5,944,699	+		PP_5212	0.13	-1.3
5,944,700	-		PP_5212	0.13	-1.4
5,944,700	-		PP_5212	0.13	-1.2
5,944,700	-		PP_5212	0.13	-0.9
5,944,700	-		PP_5212	0.13	+0.5
5,944,829	+		PP_5212	0.26	-0.4
5,944,829	+		PP_5212	0.26	-0.2
5,944,830	-		PP_5212	0.26	-1.9
5,944,830	-		PP_5212	0.26	-1.2
5,944,836	+		PP_5212	0.27	+0.3
5,944,837	-		PP_5212	0.27	-2.2
5,944,866	+		PP_5212	0.30	-1.2
5,944,866	+		PP_5212	0.30	+0.2
5,945,008	-		PP_5212	0.45	-1.7
5,945,163	+		PP_5212	0.61	+0.6
5,945,163	+		PP_5212	0.61	-0.9
5,945,163	+		PP_5212	0.61	-0.9
5,945,164	-		PP_5212	0.61	-2.7
5,945,457	+				+0.5
5,945,457	+				+0.3
5,945,458	-				+1.1
5,945,549	-				+0.6
5,945,549	-				+1.1