Strain Fitness in Pseudomonas putida KT2440 around PP_5063

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,773,249	+				+0.7
5,773,250	-				+0.2
5,773,431	+				+0.5
5,773,432	-				-0.6
5,773,432	-				-0.1
5,773,453	-				+1.0
5,773,582	+		PP_5719	0.22	+0.9
5,773,624	+		PP_5719	0.28	+0.3
5,773,837	+		PP_5719	0.61	-1.3
5,773,879	+		PP_5719	0.67	-0.9
5,773,879	+		PP_5719	0.67	-1.7
5,773,880	-		PP_5719	0.67	+0.3
5,773,880	-		PP_5719	0.67	+0.7
5,773,996	+		PP_5719	0.85	-0.6
5,773,996	+		PP_5719	0.85	-3.4
5,773,997	-		PP_5719	0.85	+0.2
5,773,997	-		PP_5719	0.85	-1.0
5,774,006	+		PP_5719	0.86	-0.4
5,774,006	+		PP_5719	0.86	-0.3
5,774,006	+		PP_5719	0.86	-2.0
5,774,006	+		PP_5719	0.86	-2.5
5,774,007	-		PP_5719	0.87	+0.8
5,774,133	+				-0.8
5,774,133	+				-2.1
5,774,133	+				+0.5
5,774,134	-				-3.4
5,774,162	-				-1.0
5,774,176	+				-0.3
5,774,176	+				+1.3
5,774,176	+				-1.2
5,774,177	-				-0.0
5,774,177	-				+0.7
5,774,246	+				-0.6
5,774,425	+		PP_5063	0.20	+0.3
5,774,477	-		PP_5063	0.23	+0.1
5,774,479	+		PP_5063	0.23	+0.2
5,774,479	+		PP_5063	0.23	-0.4
5,774,479	+		PP_5063	0.23	-0.8
5,774,479	+		PP_5063	0.23	+0.6
5,774,493	-		PP_5063	0.24	+0.8
5,774,593	+		PP_5063	0.31	+3.1
5,774,594	-		PP_5063	0.31	+0.9
5,774,594	-		PP_5063	0.31	-0.2
5,774,594	-		PP_5063	0.31	+0.4
5,774,594	-		PP_5063	0.31	+1.0
5,774,971	+		PP_5063	0.57	+0.6
5,774,971	+		PP_5063	0.57	-0.4
5,774,972	-		PP_5063	0.57	+0.2
5,775,325	+		PP_5063	0.81	+1.2
5,775,326	-		PP_5063	0.81	-1.1
5,775,499	+				+0.7
5,775,550	+				-2.1
5,775,551	-				-1.2
5,775,551	-				+0.8
5,775,677	+				-0.4
5,775,703	-				+0.3
5,775,775	+				+0.8
5,775,775	+				+1.1
5,775,775	+				-0.3
5,775,775	+				+0.5
5,775,879	+		PP_5064	0.11	-0.1
5,775,901	-		PP_5064	0.13	-0.4
5,775,901	-		PP_5064	0.13	-0.1
5,775,901	-		PP_5064	0.13	+0.4
5,775,975	+		PP_5064	0.17	+0.2
5,775,975	+		PP_5064	0.17	-0.6
5,775,975	+		PP_5064	0.17	-2.2
5,775,976	-		PP_5064	0.17	-0.0
5,775,976	-		PP_5064	0.17	+0.3
5,775,976	-		PP_5064	0.17	-0.3
5,776,041	+		PP_5064	0.21	+1.1
5,776,041	+		PP_5064	0.21	+1.3
5,776,041	+		PP_5064	0.21	+1.0
5,776,041	+		PP_5064	0.21	-1.5
5,776,102	-		PP_5064	0.25	-0.7
5,776,102	-		PP_5064	0.25	-1.2
5,776,102	-		PP_5064	0.25	+0.8
5,776,187	-		PP_5064	0.30	+0.7
5,776,299	+		PP_5064	0.36	-0.3
5,776,398	+		PP_5064	0.42	-0.1
5,776,399	-		PP_5064	0.42	+0.0
5,776,399	-		PP_5064	0.42	-0.4
5,776,399	-		PP_5064	0.42	+0.2
5,776,596	+		PP_5064	0.54	+1.1
5,776,596	+		PP_5064	0.54	-1.3
5,776,596	+		PP_5064	0.54	+1.7
5,776,596	+		PP_5064	0.54	+0.1
5,776,597	-		PP_5064	0.54	-0.6