Strain Fitness in Pseudomonas putida KT2440 around PP_5045

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,749,717	-		PP_5044	0.86	-0.8
5,750,030	+				+1.6
5,750,030	+				-0.0
5,750,031	-				-0.2
5,750,031	-				+0.8
5,750,042	-				-3.0
5,750,083	-				-0.1
5,750,083	-				-1.0
5,750,083	-				-0.4
5,750,093	+				+0.6
5,750,109	+				+0.6
5,750,197	-				-0.4
5,750,250	+				+0.6
5,750,251	-				-2.9
5,750,781	+		PP_5045	0.46	+1.6
5,750,782	-				+0.6
5,750,782	-		PP_5045	0.46	-1.6
5,750,782	-		PP_5045	0.46	-1.0
5,750,782	-		PP_5045	0.46	-0.4
5,750,782	-		PP_5045	0.46	-1.6
5,750,846	+		PP_5045	0.51	+1.6
5,750,847	-		PP_5045	0.51	+0.6
5,750,881	-		PP_5045	0.53	-0.1
5,750,973	+		PP_5045	0.59	-1.0
5,750,973	+		PP_5045	0.59	-1.0
5,751,079	-		PP_5045	0.67	-0.2
5,751,178	-		PP_5045	0.74	-1.0
5,751,178	-		PP_5045	0.74	+1.2
5,751,320	+		PP_5045	0.83	-1.0
5,751,568	-				+0.4
5,751,610	-				+0.7
5,751,661	+				-1.0
5,751,662	-				-0.6
5,751,662	-				+0.5
5,751,662	-				+0.6
5,751,662	-				-0.3
5,751,723	-				-0.4
5,751,772	-				+0.8
5,751,804	+				+1.2
5,751,835	+				+0.3
5,751,836	-				+1.1
5,751,836	-				+0.1
5,751,892	-				-0.8
5,751,892	-				-1.7
5,752,013	+				-1.6