Strain Fitness in Pseudomonas putida KT2440 around PP_4696

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
5,336,125	+		PP_4695	0.86	+0.7
5,336,125	+		PP_4695	0.86	+1.1
5,336,125	+		PP_4695	0.86	+1.2
5,336,400	+				-2.1
5,336,400	+				+1.1
5,336,401	-				-1.8
5,336,401	-				+0.2
5,336,421	+				-0.2
5,336,422	-				-1.1
5,336,422	-				-1.2
5,336,782	+		PP_4696	0.16	-2.3
5,336,782	+		PP_4696	0.16	-0.8
5,336,833	+		PP_4696	0.20	+2.1
5,336,834	-		PP_4696	0.20	-0.9
5,336,884	-		PP_4696	0.23	+1.4
5,336,955	+		PP_4696	0.28	-1.2
5,336,955	+		PP_4696	0.28	-2.7
5,336,956	-		PP_4696	0.28	+0.1
5,336,956	-		PP_4696	0.28	+1.4
5,336,956	-		PP_4696	0.28	-2.5
5,337,037	+		PP_4696	0.34	-0.4
5,337,037	+		PP_4696	0.34	-0.9
5,337,037	+		PP_4696	0.34	-1.9
5,337,038	-		PP_4696	0.34	-0.9
5,337,038	-		PP_4696	0.34	-2.3
5,337,038	-		PP_4696	0.34	+0.1
5,337,038	-		PP_4696	0.34	-2.8
5,337,368	+		PP_4696	0.57	+0.4
5,337,637	+		PP_4696	0.75	-1.8
5,337,638	-		PP_4696	0.75	+0.2
5,337,847	+		PP_4696	0.90	-1.8
5,337,917	+				-1.1
5,337,981	+				-0.2
5,337,982	-				-2.9
5,338,000	+				+0.1
5,338,000	+				+0.9
5,338,001	-				+1.2
5,338,001	-				+0.6
5,338,001	-				-0.2
5,338,167	+				+0.1
5,338,600	+				-0.4
5,338,601	-				-0.8
5,338,630	+				+0.4
5,338,631	-				-0.7
5,338,631	-				-0.0
5,338,651	-				-0.8
5,338,681	+				+1.0
5,338,704	+				+0.9
5,338,704	+				+0.5
5,338,705	-				+0.2
5,338,705	-				-0.0
5,338,736	+				+0.9