Strain Fitness in Pseudomonas putida KT2440 around PP_4019

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,529,571	+				-0.6
4,529,572	-				-0.8
4,529,626	-		PP_4018	0.14	-2.6
4,529,739	+		PP_4018	0.40	+0.1
4,529,739	+		PP_4018	0.40	-1.1
4,529,905	+		PP_4018	0.79	-1.1
4,529,906	-		PP_4018	0.79	-0.7
4,529,928	-		PP_4018	0.84	-1.2
4,530,053	+				-1.4
4,530,053	+				-2.4
4,530,054	-				+0.6
4,530,054	-				-0.3
4,530,054	-				+0.0
4,530,054	-				-0.0
4,530,054	-				-0.7
4,530,055	+				-0.4
4,530,055	+				-2.5
4,530,055	+				+0.1
4,530,055	+				-3.1
4,530,055	+				-1.0
4,530,055	+				-1.6
4,530,055	+				+0.2
4,530,055	+				-0.3
4,530,055	+				+0.7
4,530,055	+				-1.3
4,530,055	+				-0.2
4,530,055	+				+0.6
4,530,055	+				+0.0
4,530,056	-				-0.4
4,530,056	-				+0.2
4,530,056	-				+0.2
4,530,056	-				-0.7
4,530,056	-				+0.6
4,530,056	-				+0.2
4,530,056	-				+1.0
4,530,056	-				-0.0
4,530,128	+				-0.2
4,530,128	+				-0.3
4,530,128	+				-2.9
4,530,129	-				+1.3
4,530,129	-				+0.1
4,530,129	-				-0.1
4,530,129	-				-1.2
4,530,129	-				+1.7
4,530,129	-				+0.0
4,530,129	-				+0.6
4,530,315	+				+0.2
4,530,315	+				+0.1
4,530,316	-				+0.4
4,530,327	+				+0.5
4,530,328	-				+0.9
4,530,328	-				+0.4
4,530,385	+		PP_4019	0.11	+1.2
4,530,737	-		PP_4019	0.29	+1.6
4,530,746	+		PP_4019	0.30	+0.6
4,530,746	+		PP_4019	0.30	+0.4
4,530,746	+		PP_4019	0.30	+3.0
4,530,747	-		PP_4019	0.30	+0.6
4,530,820	+		PP_4019	0.34	-0.2
4,531,003	+		PP_4019	0.43	+0.7
4,531,003	+				+0.2
4,531,004	-		PP_4019	0.43	-0.3
4,531,093	-		PP_4019	0.47	+0.0
4,531,108	+		PP_4019	0.48	-1.0
4,531,108	+		PP_4019	0.48	-1.1
4,531,108	+		PP_4019	0.48	-0.1
4,531,108	+		PP_4019	0.48	+0.5
4,531,108	+		PP_4019	0.48	+1.5
4,531,109	-		PP_4019	0.48	-1.4
4,531,109	-		PP_4019	0.48	+0.1
4,531,109	-		PP_4019	0.48	-0.7
4,531,109	-		PP_4019	0.48	+1.2
4,531,109	-		PP_4019	0.48	-0.6
4,531,109	-		PP_4019	0.48	+0.9
4,531,138	-		PP_4019	0.50	+0.6
4,531,224	+		PP_4019	0.54	+1.3
4,531,347	+		PP_4019	0.60	-0.4
4,531,347	+		PP_4019	0.60	-0.5
4,531,348	-		PP_4019	0.60	-0.7
4,531,348	-		PP_4019	0.60	-0.5
4,531,348	-		PP_4019	0.60	+1.0
4,531,348	-		PP_4019	0.60	+0.4
4,531,398	+		PP_4019	0.63	-0.4
4,531,399	-		PP_4019	0.63	+1.6
4,531,399	-		PP_4019	0.63	+0.0
4,531,399	-		PP_4019	0.63	-2.9
4,531,576	+		PP_4019	0.72	+1.2
4,531,577	-		PP_4019	0.72	+1.2
4,531,577	-		PP_4019	0.72	-1.1
4,532,122	-				+0.3
4,532,122	-				+0.6
4,532,165	+				+0.2
4,532,165	+				-1.4
4,532,166	-				-0.1
4,532,166	-				-1.3
4,532,171	+				+0.2
4,532,171	+				+0.4
4,532,302	+				-0.8
4,532,306	-				+0.4
4,532,306	-				+0.5
4,532,306	-				+0.5
4,532,317	+				-1.1
4,532,317	+				-0.1
4,532,318	-				+0.4
4,532,336	+				+1.2
4,532,337	-				+3.6
4,532,337	-				-1.4
4,532,337	-				+0.2
4,532,570	+		PP_4020	0.23	+0.2
4,532,571	-		PP_4020	0.23	+0.9
4,532,670	-		PP_4020	0.31	-0.3
4,532,721	+		PP_4020	0.35	-0.1
4,532,721	+		PP_4020	0.35	+0.4
4,532,722	-		PP_4020	0.35	-1.4
4,532,722	-		PP_4020	0.35	-2.7
4,532,722	-		PP_4020	0.35	+0.5
4,532,722	-		PP_4020	0.35	+0.9
4,532,731	+		PP_4020	0.36	-1.0
4,532,732	-		PP_4020	0.36	-0.5
4,532,914	+		PP_4020	0.50	+0.4
4,532,936	-		PP_4020	0.52	+0.5
4,532,975	+		PP_4020	0.55	-2.0
4,532,975	+		PP_4020	0.55	-0.9
4,532,976	-		PP_4020	0.55	+1.6
4,532,976	-		PP_4020	0.55	+0.4
4,532,976	-		PP_4020	0.55	+0.3
4,532,998	+		PP_4020	0.57	+1.2
4,533,098	+		PP_4020	0.64	-0.6
4,533,099	-		PP_4020	0.64	+1.0
4,533,099	-		PP_4020	0.64	-0.8
4,533,101	+		PP_4020	0.64	+0.5
4,533,102	-		PP_4020	0.65	+0.4
4,533,102	-		PP_4020	0.65	+0.1