Strain Fitness in Pseudomonas putida KT2440 around PP_3877

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,396,628	+		PP_3874	0.85	+0.1
4,396,629	-		PP_3874	0.85	+0.3
4,396,667	+				+0.8
4,396,667	+				-0.4
4,396,667	+				+0.3
4,396,668	-				+0.2
4,396,668	-				+0.1
4,396,671	+				-3.2
4,396,671	+				-1.0
4,396,671	+				-0.2
4,396,672	-				+0.7
4,396,672	-				-0.4
4,396,679	+				+0.4
4,396,863	+		PP_3875	0.32	+1.8
4,396,874	+		PP_3875	0.34	+0.6
4,396,875	-		PP_3875	0.34	+0.6
4,396,911	+		PP_3875	0.40	-0.1
4,396,921	+		PP_3875	0.42	+0.3
4,396,921	+		PP_3875	0.42	-0.4
4,396,922	-		PP_3875	0.42	-0.2
4,397,221	-				+0.5
4,397,221	-				+0.0
4,397,384	+		PP_3876	0.43	-0.1
4,397,472	+		PP_3876	0.70	+2.1
4,397,473	-		PP_3876	0.71	+0.7
4,397,545	-				-0.2
4,397,554	+				+1.0
4,397,809	+		PP_3877	0.20	-0.8
4,397,834	+		PP_3877	0.22	-1.6
4,397,835	-		PP_3877	0.22	+0.7
4,397,835	-		PP_3877	0.22	-2.7
4,397,860	-		PP_3877	0.24	-1.4
4,398,155	+		PP_3877	0.47	-0.1
4,398,155	+		PP_3877	0.47	-3.0
4,398,155	+		PP_3877	0.47	-1.0
4,398,155	+		PP_3877	0.47	-0.0
4,398,156	-		PP_3877	0.47	-0.3
4,398,156	-		PP_3877	0.47	-1.8
4,398,289	-		PP_3877	0.57	-0.3
4,398,289	-		PP_3877	0.57	-1.3
4,398,486	+		PP_3877	0.72	-0.1
4,398,487	-		PP_3877	0.72	-0.9
4,398,674	-		PP_3877	0.86	-0.5
4,398,817	+				+0.7
4,398,818	-				+0.9
4,398,818	-				+0.2
4,398,818	-				-0.9
4,398,832	+				-0.8
4,398,833	-				+1.4
4,398,845	+				-2.6
4,399,141	+		PP_3878	0.23	+0.5
4,399,142	-		PP_3878	0.23	+0.1
4,399,171	+		PP_3878	0.26	+0.9
4,399,171	+		PP_3878	0.26	+0.4
4,399,171	+		PP_3878	0.26	-0.6
4,399,172	-		PP_3878	0.26	+0.9
4,399,172	-		PP_3878	0.26	-1.3
4,399,341	+		PP_3878	0.44	-2.9
4,399,342	-		PP_3878	0.44	+0.1
4,399,342	-		PP_3878	0.44	+1.2
4,399,394	-		PP_3878	0.49	-0.2
4,399,553	+		PP_3878	0.65	-1.8
4,399,553	+		PP_3878	0.65	+0.1
4,399,554	-		PP_3878	0.65	-1.2
4,399,554	-		PP_3878	0.65	+0.4
4,399,579	+		PP_3878	0.68	+1.1
4,399,580	-		PP_3878	0.68	-2.0
4,399,580	-		PP_3878	0.68	-0.1
4,399,714	+		PP_3878	0.82	-0.5
4,399,729	+		PP_3878	0.83	-1.1
4,399,729	+		PP_3878	0.83	-0.3
4,399,729	+		PP_3878	0.83	+0.2
4,399,729	+		PP_3878	0.83	+0.5
4,399,729	+		PP_3878	0.83	-2.2
4,399,730	-		PP_3878	0.84	-0.3
4,399,835	+				+0.4
4,399,835	+				-1.9
4,399,836	-				+0.8