Strain Fitness in Pseudomonas putida KT2440 around PP_3814

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,339,569	+		PP_3813	0.60	+0.0
4,339,569	+		PP_3813	0.60	+0.6
4,339,569	+		PP_3813	0.60	-1.3
4,339,569	+		PP_3813	0.60	-0.3
4,339,569	+		PP_3813	0.60	+0.1
4,339,570	-		PP_3813	0.60	+0.6
4,339,570	-		PP_3813	0.60	+0.3
4,339,693	-		PP_3813	0.71	-0.9
4,339,693	-		PP_3813	0.71	+0.4
4,339,752	-		PP_3813	0.76	+0.4
4,339,752	-		PP_3813	0.76	+0.3
4,339,863	+		PP_3813	0.86	-2.7
4,339,864	-		PP_3813	0.86	-0.5
4,340,037	-				+1.4
4,340,103	+				+0.9
4,340,167	-				+0.2
4,340,167	-				-0.6
4,340,237	-				-1.2
4,340,237	-				-0.8
4,340,242	+				-2.3
4,340,243	-				+0.6
4,340,321	+				-0.2
4,340,321	+				-0.3
4,340,342	-				+0.4
4,340,354	-				-0.9
4,340,354	-				+0.3
4,340,354	-				+0.3
4,340,743	-		PP_3814	0.39	-1.2
4,340,743	-		PP_3814	0.39	-0.8
4,340,829	+		PP_3814	0.47	-1.2
4,340,881	+		PP_3814	0.52	-0.1
4,340,882	-		PP_3814	0.52	-1.6
4,341,039	+		PP_3814	0.68	-0.7
4,341,039	+		PP_3814	0.68	-1.6
4,341,407	-				+1.1
4,341,584	+		PP_3815	0.24	-0.1
4,341,584	+		PP_3815	0.24	+0.0
4,341,585	-		PP_3815	0.24	-0.8
4,341,585	-		PP_3815	0.24	-0.9
4,341,585	-		PP_3815	0.24	+1.4
4,341,612	-		PP_3815	0.27	-1.9
4,341,783	-		PP_3815	0.45	+1.1
4,341,905	+		PP_3815	0.58	+0.8
4,341,905	+		PP_3815	0.58	-1.0
4,341,905	+		PP_3815	0.58	+1.0
4,341,906	-		PP_3815	0.59	-0.2
4,341,906	-		PP_3815	0.59	-0.0
4,341,906	-		PP_3815	0.59	+1.1
4,341,906	-		PP_3815	0.59	+1.2
4,341,906	-		PP_3815	0.59	+0.6
4,342,094	+		PP_3815	0.79	+1.9
4,342,094	+		PP_3815	0.79	-0.7
4,342,094	+		PP_3815	0.79	+0.1
4,342,094	+		PP_3815	0.79	+1.5
4,342,094	+		PP_3815	0.79	+0.9
4,342,094	+		PP_3815	0.79	+0.4
4,342,095	-		PP_3815	0.79	+0.4
4,342,095	-				-0.5
4,342,095	-		PP_3815	0.79	-0.0
4,342,095	-		PP_3815	0.79	-1.2
4,342,095	-		PP_3815	0.79	-2.7
4,342,212	+				-0.2
4,342,235	+				+1.1
4,342,235	+				-1.0
4,342,235	+				-0.6
4,342,236	-				-0.2
4,342,241	+				-2.3
4,342,242	-				+0.5
4,342,283	+				+0.2
4,342,283	+				+0.6
4,342,331	-				+0.1
4,342,340	+				+0.3
4,342,340	+				-0.9
4,342,341	-				+0.3