Strain Fitness in Pseudomonas putida KT2440 around PP_3722

Experiment: Butanol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3721 and PP_3722 are separated by 24 nucleotidesPP_3722 and PP_3723 are separated by 34 nucleotides PP_3721: PP_3721 - arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data), at 4,243,830 to 4,245,020 _3721 PP_3722: PP_3722 - Alanine racemase, at 4,245,045 to 4,246,274 _3722 PP_3723: PP_3723 - putative 2-ketoarginine decarboxylase AruI, at 4,246,309 to 4,247,916 _3723 Position (kb) 4245 4246 4247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4244.386 kb on + strand, within PP_3721at 4244.387 kb on - strand, within PP_3721at 4244.402 kb on - strand, within PP_3721at 4244.635 kb on + strand, within PP_3721at 4244.636 kb on - strand, within PP_3721at 4244.644 kb on + strand, within PP_3721at 4244.644 kb on + strand, within PP_3721at 4244.644 kb on + strand, within PP_3721at 4244.644 kb on + strandat 4244.644 kb on + strand, within PP_3721at 4244.644 kb on + strand, within PP_3721at 4244.645 kb on - strand, within PP_3721at 4244.645 kb on - strand, within PP_3721at 4244.645 kb on - strand, within PP_3721at 4244.645 kb on - strand, within PP_3721at 4244.685 kb on + strand, within PP_3721at 4244.686 kb on - strand, within PP_3721at 4244.705 kb on - strand, within PP_3721at 4244.705 kb on - strand, within PP_3721at 4244.705 kb on - strand, within PP_3721at 4244.817 kb on + strand, within PP_3721at 4244.828 kb on - strand, within PP_3721at 4244.873 kb on + strand, within PP_3721at 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.082 kb on - strandat 4245.305 kb on - strand, within PP_3722at 4245.326 kb on + strand, within PP_3722at 4245.326 kb on + strand, within PP_3722at 4245.326 kb on + strand, within PP_3722at 4245.327 kb on - strand, within PP_3722at 4245.327 kb on - strand, within PP_3722at 4245.327 kb on - strand, within PP_3722at 4245.373 kb on + strand, within PP_3722at 4245.397 kb on + strand, within PP_3722at 4245.445 kb on + strand, within PP_3722at 4245.495 kb on + strand, within PP_3722at 4245.496 kb on - strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.633 kb on + strand, within PP_3722at 4245.634 kb on - strand, within PP_3722at 4245.634 kb on - strand, within PP_3722at 4245.634 kb on - strand, within PP_3722at 4245.872 kb on - strand, within PP_3722at 4246.017 kb on + strand, within PP_3722at 4246.018 kb on - strand, within PP_3722at 4246.039 kb on + strand, within PP_3722at 4246.260 kb on - strandat 4246.281 kb on + strandat 4246.298 kb on + strandat 4246.299 kb on - strandat 4246.310 kb on + strandat 4246.497 kb on + strand, within PP_3723at 4246.595 kb on + strand, within PP_3723at 4246.595 kb on + strand, within PP_3723at 4246.595 kb on + strand, within PP_3723at 4246.596 kb on - strand, within PP_3723at 4246.621 kb on + strand, within PP_3723at 4246.622 kb on - strand, within PP_3723at 4246.694 kb on + strand, within PP_3723at 4246.716 kb on + strand, within PP_3723at 4246.717 kb on - strand, within PP_3723at 4246.717 kb on - strand, within PP_3723at 4246.743 kb on - strand, within PP_3723at 4246.743 kb on - strand, within PP_3723at 4246.743 kb on - strand, within PP_3723at 4246.754 kb on + strand, within PP_3723at 4246.754 kb on + strand, within PP_3723

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Per-strain Table

Position Strand Gene LocusTag Fraction Butanol 0.6 vol%
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4,244,386 + PP_3721 0.47 -1.5
4,244,387 - PP_3721 0.47 +0.4
4,244,402 - PP_3721 0.48 -0.2
4,244,635 + PP_3721 0.68 +0.9
4,244,636 - PP_3721 0.68 -0.6
4,244,644 + PP_3721 0.68 -0.1
4,244,644 + PP_3721 0.68 +0.9
4,244,644 + PP_3721 0.68 +0.9
4,244,644 + +1.1
4,244,644 + PP_3721 0.68 -1.0
4,244,644 + PP_3721 0.68 +0.5
4,244,645 - PP_3721 0.68 +0.6
4,244,645 - PP_3721 0.68 -0.9
4,244,645 - PP_3721 0.68 -1.3
4,244,645 - PP_3721 0.68 -1.4
4,244,685 + PP_3721 0.72 -1.3
4,244,686 - PP_3721 0.72 +0.4
4,244,705 - PP_3721 0.73 +1.3
4,244,705 - PP_3721 0.73 +1.5
4,244,705 - PP_3721 0.73 +0.3
4,244,817 + PP_3721 0.83 +0.8
4,244,828 - PP_3721 0.84 +0.1
4,244,873 + PP_3721 0.88 +0.4
4,245,057 + +0.6
4,245,057 + -0.2
4,245,057 + +0.5
4,245,058 - +1.1
4,245,058 - +0.9
4,245,082 - +0.5
4,245,305 - PP_3722 0.21 -3.8
4,245,326 + PP_3722 0.23 -2.1
4,245,326 + PP_3722 0.23 +0.1
4,245,326 + PP_3722 0.23 -1.3
4,245,327 - PP_3722 0.23 -0.6
4,245,327 - PP_3722 0.23 -0.0
4,245,327 - PP_3722 0.23 -0.7
4,245,373 + PP_3722 0.27 -0.7
4,245,397 + PP_3722 0.29 -0.5
4,245,445 + PP_3722 0.33 -1.5
4,245,495 + PP_3722 0.37 +0.7
4,245,496 - PP_3722 0.37 -0.5
4,245,633 + PP_3722 0.48 -0.9
4,245,633 + PP_3722 0.48 -0.2
4,245,633 + PP_3722 0.48 -0.5
4,245,633 + PP_3722 0.48 -1.2
4,245,633 + PP_3722 0.48 -3.6
4,245,633 + PP_3722 0.48 -0.5
4,245,634 - PP_3722 0.48 -0.4
4,245,634 - PP_3722 0.48 -0.4
4,245,634 - PP_3722 0.48 -0.0
4,245,872 - PP_3722 0.67 -0.5
4,246,017 + PP_3722 0.79 -0.5
4,246,018 - PP_3722 0.79 -0.5
4,246,039 + PP_3722 0.81 +1.5
4,246,260 - -1.0
4,246,281 + -0.5
4,246,298 + -1.1
4,246,299 - +0.1
4,246,310 + +1.1
4,246,497 + PP_3723 0.12 -0.1
4,246,595 + PP_3723 0.18 +0.9
4,246,595 + PP_3723 0.18 -0.3
4,246,595 + PP_3723 0.18 -0.4
4,246,596 - PP_3723 0.18 -0.5
4,246,621 + PP_3723 0.19 +0.2
4,246,622 - PP_3723 0.19 -3.1
4,246,694 + PP_3723 0.24 -0.5
4,246,716 + PP_3723 0.25 +0.5
4,246,717 - PP_3723 0.25 -0.1
4,246,717 - PP_3723 0.25 -1.6
4,246,743 - PP_3723 0.27 -0.0
4,246,743 - PP_3723 0.27 +0.1
4,246,743 - PP_3723 0.27 -0.4
4,246,754 + PP_3723 0.28 +2.1
4,246,754 + PP_3723 0.28 -0.0

Or see this region's nucleotide sequence