Strain Fitness in Pseudomonas putida KT2440 around PP_3662

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,158,508	+		PP_3661	0.49	+0.2
4,158,509	-		PP_3661	0.49	+0.8
4,158,509	-		PP_3661	0.49	-1.3
4,158,509	-		PP_3661	0.49	+0.1
4,158,509	-		PP_3661	0.49	+0.3
4,158,521	+		PP_3661	0.50	-0.5
4,158,522	-		PP_3661	0.50	-0.3
4,158,634	+		PP_3661	0.61	+1.2
4,158,635	-		PP_3661	0.61	-1.5
4,158,718	+		PP_3661	0.68	-0.8
4,159,131	+				-2.0
4,159,131	+				+0.2
4,159,132	-				-0.2
4,159,258	+				-4.3
4,159,258	+				-0.3
4,159,259	-				-1.6
4,159,259	-				+0.2
4,159,369	+				+0.1
4,159,369	+				-0.6
4,159,437	+		PP_3662	0.13	-1.4
4,159,437	+		PP_3662	0.13	-0.9
4,159,437	+		PP_3662	0.13	+0.5
4,159,450	+		PP_3662	0.14	-1.5
4,159,450	+		PP_3662	0.14	-0.9
4,159,450	+		PP_3662	0.14	-1.1
4,159,451	-		PP_3662	0.14	-0.5
4,159,451	-		PP_3662	0.14	-0.4
4,159,657	+		PP_3662	0.29	-1.1
4,159,657	+		PP_3662	0.29	-1.3
4,159,658	-		PP_3662	0.29	-1.6
4,159,756	+		PP_3662	0.36	-0.2
4,159,756	+		PP_3662	0.36	-3.5
4,159,756	+		PP_3662	0.36	-0.2
4,159,757	-		PP_3662	0.36	+1.6
4,159,763	-		PP_3662	0.37	+0.7
4,159,763	-		PP_3662	0.37	+0.3
4,159,763	-		PP_3662	0.37	+0.0
4,160,065	+		PP_3662	0.59	+0.0
4,160,065	+		PP_3662	0.59	-0.9
4,160,066	-		PP_3662	0.59	-0.6
4,160,066	-		PP_3662	0.59	+0.2
4,160,149	+		PP_3662	0.65	-1.7
4,160,150	-		PP_3662	0.65	-0.2
4,160,210	-		PP_3662	0.69	-0.4
4,160,531	+				-0.9
4,160,531	+				-1.1
4,160,605	+				-2.4
4,160,605	+				+2.4
4,160,605	+				-2.4
4,160,606	-				-0.1
4,160,609	+				+0.2
4,160,610	-				-0.7
4,160,617	+				+0.4
4,160,617	+				-0.1
4,160,617	+				+1.3
4,160,618	-				+0.2
4,160,618	-				+0.2
4,160,703	+				+1.1
4,160,723	+				-1.2
4,160,723	+				-1.3
4,160,723	+				+1.3
4,160,723	+				+0.1
4,160,724	-				-0.8
4,160,724	-				+0.3
4,160,724	-				-0.2
4,160,724	-				+0.5
4,160,743	+				+0.4
4,160,743	+				-0.6
4,160,744	-				+0.9
4,160,744	-				-0.4
4,160,744	-				+0.1
4,160,825	+				-1.1
4,160,923	-		PP_3663	0.13	-1.5
4,160,943	-		PP_3663	0.14	-0.4
4,161,114	+		PP_3663	0.28	+0.8
4,161,239	+		PP_3663	0.37	-0.5
4,161,240	-		PP_3663	0.37	-0.1
4,161,301	+		PP_3663	0.42	-0.0
4,161,301	+		PP_3663	0.42	+0.8
4,161,302	-		PP_3663	0.42	+0.8
4,161,302	-		PP_3663	0.42	-0.4
4,161,440	+		PP_3663	0.53	-1.1
4,161,440	+		PP_3663	0.53	-1.5
4,161,440	+		PP_3663	0.53	+0.1
4,161,440	+		PP_3663	0.53	-0.4
4,161,440	+		PP_3663	0.53	-0.1
4,161,441	-		PP_3663	0.53	+1.7
4,161,467	+		PP_3663	0.55	-0.9
4,161,468	-		PP_3663	0.55	+0.2
4,161,468	-		PP_3663	0.55	+0.6
4,161,468	-		PP_3663	0.55	-0.4