Strain Fitness in Pseudomonas putida KT2440 around PP_3640

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,134,949	+				+2.1
4,134,950	-				+1.1
4,135,093	+				+0.2
4,135,094	-				+0.2
4,135,094	-				+1.0
4,135,106	+				+0.6
4,135,106	+				-0.4
4,135,107	-				-0.8
4,135,107	-				-1.2
4,135,116	+				-0.2
4,135,116	+				-2.1
4,135,117	-				+0.3
4,135,117	-				+1.6
4,135,117	-				-0.7
4,135,131	-				+0.6
4,135,223	-		PP_3639	0.14	+1.6
4,135,284	-		PP_3639	0.23	+0.6
4,135,284	-		PP_3639	0.23	+0.3
4,135,548	-		PP_3639	0.63	-0.9
4,135,548	-		PP_3639	0.63	+0.0
4,135,548	-		PP_3639	0.63	+0.9
4,135,670	-		PP_3639	0.82	-0.5
4,135,670	-		PP_3639	0.82	-0.6
4,135,670	-		PP_3639	0.82	-2.0
4,135,670	-		PP_3639	0.82	+0.3
4,135,718	-		PP_3639	0.89	-0.3
4,135,718	-		PP_3639	0.89	+1.1
4,135,734	-				+0.6
4,135,734	-				-0.2
4,135,740	+				+0.2
4,135,740	+				-0.4
4,135,741	-				-3.0
4,135,789	+				-1.0
4,135,789	+				+1.1
4,135,789	+				+0.2
4,135,790	-				+2.1
4,135,790	-				+0.7
4,135,790	-				-3.8
4,135,790	-				-0.5
4,135,790	-				-0.1
4,135,790	-				-0.8
4,135,826	+				-0.3
4,135,826	+				+0.0
4,135,827	-				+0.6
4,135,827	-				+0.1
4,135,870	+				-0.8
4,135,871	-				-0.9
4,136,196	-		PP_3640	0.44	-0.9
4,136,320	+		PP_3640	0.57	+0.9
4,136,320	+		PP_3640	0.57	-1.0
4,136,321	-		PP_3640	0.57	-1.9
4,136,597	+		PP_3640	0.87	+0.1
4,136,597	+		PP_3640	0.87	-0.1
4,136,615	-		PP_3640	0.89	-0.7
4,136,814	+				-0.2
4,136,843	+				-0.1
4,136,844	-				-2.0
4,136,846	+				+0.6
4,136,847	-				-0.2
4,136,847	-				-1.2
4,136,847	-				+0.4
4,136,847	-				+1.2
4,136,913	-				+0.0
4,136,924	+		PP_3641	0.10	+0.3
4,136,924	+		PP_3641	0.10	+1.1
4,136,924	+		PP_3641	0.10	-1.1
4,136,925	-		PP_3641	0.10	-0.0
4,136,925	-				+1.1
4,136,935	-		PP_3641	0.11	+0.1
4,137,005	+		PP_3641	0.16	+1.1
4,137,005	+		PP_3641	0.16	+1.3
4,137,006	-		PP_3641	0.16	-0.2
4,137,006	-		PP_3641	0.16	+0.5
4,137,006	-		PP_3641	0.16	+1.2
4,137,006	-		PP_3641	0.16	+0.9
4,137,006	-		PP_3641	0.16	+0.6
4,137,284	+		PP_3641	0.36	+1.7
4,137,285	-		PP_3641	0.36	-0.2
4,137,461	+		PP_3641	0.48	-0.7
4,137,461	+		PP_3641	0.48	+0.7
4,137,461	+		PP_3641	0.48	+0.8
4,137,461	+		PP_3641	0.48	-0.6
4,137,461	+		PP_3641	0.48	+0.1
4,137,461	+		PP_3641	0.48	+0.1
4,137,462	-		PP_3641	0.48	+1.3
4,137,462	-		PP_3641	0.48	-1.0
4,137,462	-		PP_3641	0.48	-0.4
4,137,506	+		PP_3641	0.52	+1.3
4,137,516	-		PP_3641	0.52	+0.5
4,137,516	-		PP_3641	0.52	+0.5
4,137,516	-		PP_3641	0.52	-0.6
4,137,681	+		PP_3641	0.64	-1.5
4,137,681	+		PP_3641	0.64	-1.2