Strain Fitness in Pseudomonas putida KT2440 around PP_3581

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
4,061,403	-		PP_3579	0.51	+0.8
4,061,408	+		PP_3579	0.52	+0.4
4,061,409	-		PP_3579	0.52	-1.4
4,061,409	-		PP_3579	0.52	-1.0
4,061,454	+		PP_3579	0.59	-0.2
4,061,469	-		PP_3579	0.61	-0.3
4,061,690	-				+0.3
4,061,690	-				+0.8
4,061,690	-				+0.7
4,061,717	+				-1.2
4,061,717	+				-0.2
4,061,783	+				-0.8
4,061,783	+				-2.7
4,061,886	+				-0.2
4,061,909	+				+0.5
4,061,910	-				-2.1
4,061,920	-				+0.2
4,061,920	-				-1.0
4,061,920	-				+0.4
4,061,920	-				-0.9
4,061,976	-				-0.1
4,062,178	+		PP_3580	0.75	-1.7
4,062,178	+		PP_3580	0.75	+0.3
4,062,179	-		PP_3580	0.75	-0.0
4,062,233	+				-2.7
4,062,234	-				-0.4
4,062,253	-				-0.0
4,062,334	-				+0.8
4,062,488	+				+1.1
4,062,559	+		PP_3581	0.15	-0.4
4,062,656	-		PP_3581	0.19	+0.5
4,062,978	+		PP_3581	0.35	+1.4
4,063,110	+		PP_3581	0.41	+0.3
4,063,110	+		PP_3581	0.41	+0.4
4,063,110	+		PP_3581	0.41	-1.3
4,063,110	+		PP_3581	0.41	-0.7
4,063,110	+		PP_3581	0.41	+0.6
4,063,110	+		PP_3581	0.41	+1.1
4,063,111	-		PP_3581	0.41	+1.6
4,063,111	-		PP_3581	0.41	-1.0
4,063,111	-		PP_3581	0.41	+0.1
4,063,111	-		PP_3581	0.41	+0.7
4,063,111	-		PP_3581	0.41	+0.9
4,063,111	-		PP_3581	0.41	-0.1
4,063,111	-		PP_3581	0.41	-0.1
4,063,167	+		PP_3581	0.44	+0.4
4,063,393	+		PP_3581	0.55	-0.9
4,063,393	+		PP_3581	0.55	+1.1
4,063,517	-		PP_3581	0.61	-0.5
4,063,517	-		PP_3581	0.61	+1.0
4,063,606	+		PP_3581	0.65	-0.4
4,063,606	+		PP_3581	0.65	+0.9
4,063,607	-		PP_3581	0.65	-0.4
4,063,607	-		PP_3581	0.65	-0.2
4,063,607	-		PP_3581	0.65	+0.7
4,063,658	+		PP_3581	0.67	+0.6
4,063,683	-		PP_3581	0.69	-1.3
4,063,770	+		PP_3581	0.73	+1.6
4,063,770	+		PP_3581	0.73	+0.1
4,063,770	+		PP_3581	0.73	+1.1
4,063,770	+		PP_3581	0.73	+0.9
4,063,770	+		PP_3581	0.73	+1.4
4,063,771	-		PP_3581	0.73	+0.7
4,063,771	-				-0.5
4,063,829	+		PP_3581	0.76	+0.5
4,063,829	+		PP_3581	0.76	+1.1
4,063,829	+		PP_3581	0.76	+1.1
4,063,829	+		PP_3581	0.76	-1.0
4,063,829	+		PP_3581	0.76	-0.4
4,063,830	-		PP_3581	0.76	+1.1
4,063,830	-		PP_3581	0.76	-0.0
4,063,830	-		PP_3581	0.76	+0.5
4,063,833	+		PP_3581	0.76	-1.4
4,063,833	+		PP_3581	0.76	+1.2
4,063,834	-		PP_3581	0.76	-0.1
4,063,834	-		PP_3581	0.76	+0.8
4,063,971	+		PP_3581	0.82	+0.0
4,063,971	+		PP_3581	0.82	+0.3
4,063,972	-		PP_3581	0.82	+1.1
4,064,118	+		PP_3581	0.89	-0.2
4,064,271	+				+0.3
4,064,271	+				-0.6
4,064,271	+				+0.7
4,064,271	+				+1.2
4,064,272	-				-1.0
4,064,272	-				+0.8
4,064,272	-				+0.6
4,064,272	-				-0.7
4,064,322	+				-0.6
4,064,322	+				-0.2
4,064,323	-				+0.4
4,064,323	-				-0.2
4,064,323	-				+0.1
4,064,323	-				-0.2
4,064,326	+				+0.5
4,064,388	-				+1.1
4,064,621	-		PP_3582	0.10	+0.6
4,064,716	+		PP_3582	0.17	-0.8
4,064,779	+		PP_3582	0.21	+0.1
4,064,965	+		PP_3582	0.33	+0.5
4,064,966	-		PP_3582	0.33	+0.4
4,064,966	-		PP_3582	0.33	+0.9
4,064,966	-		PP_3582	0.33	-0.1
4,065,218	+		PP_3582	0.50	+0.1
4,065,295	+		PP_3582	0.55	+0.5
4,065,295	+		PP_3582	0.55	-0.8