Strain Fitness in Pseudomonas putida KT2440 around PP_3289

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
3,722,714	-				-0.5
3,722,714	-				-0.2
3,722,717	+				+0.0
3,722,717	+				-1.0
3,722,717	+				+0.0
3,722,717	+				+2.0
3,722,718	-				-0.7
3,722,718	-				+0.3
3,722,718	-				+0.5
3,722,718	-				+0.8
3,722,721	+				-2.3
3,722,804	+				-1.1
3,722,804	+				-0.0
3,722,804	+				+0.0
3,722,804	+				-1.8
3,722,804	+				-0.7
3,722,804	+				-0.5
3,722,934	-		PP_3288	0.20	-2.9
3,722,934	-		PP_3288	0.20	+0.2
3,723,048	+		PP_3288	0.33	+1.1
3,723,049	-		PP_3288	0.33	+0.4
3,723,049	-		PP_3288	0.33	-0.6
3,723,137	-		PP_3288	0.42	+0.2
3,723,162	+		PP_3288	0.45	+0.5
3,723,163	-		PP_3288	0.45	-0.8
3,723,326	+				+0.5
3,723,326	+		PP_3288	0.63	-0.0
3,723,326	+		PP_3288	0.63	-0.2
3,723,326	+		PP_3288	0.63	+0.5
3,723,327	-		PP_3288	0.63	-0.5
3,723,327	-		PP_3288	0.63	+1.0
3,723,327	-		PP_3288	0.63	+0.6
3,723,350	+		PP_3288	0.65	+0.9
3,723,351	-		PP_3288	0.65	-0.0
3,723,485	-		PP_3288	0.80	+0.8
3,723,485	-		PP_3288	0.80	-0.7
3,723,485	-				+1.0
3,723,493	-		PP_3288	0.81	-0.3
3,723,547	-		PP_3288	0.87	-3.5
3,723,563	+		PP_3288	0.88	-0.7
3,723,614	-				+0.2
3,723,798	-		PP_3289	0.18	-0.5
3,723,947	-		PP_3289	0.45	-1.3
3,723,957	-		PP_3289	0.47	-2.7
3,723,991	+		PP_3289	0.53	+0.3
3,724,010	+		PP_3289	0.56	-3.8
3,724,028	+		PP_3289	0.60	-0.8
3,724,029	-		PP_3289	0.60	+1.0
3,724,059	+		PP_3289	0.65	+0.7
3,724,060	-		PP_3289	0.66	-2.0
3,724,109	+		PP_3289	0.74	+0.7
3,724,192	+		PP_3289	0.90	-0.6
3,724,290	+				+0.7
3,724,440	+				+0.9
3,724,441	-				-0.3
3,724,673	+		PP_3290	0.26	+0.8
3,724,673	+		PP_3290	0.26	+0.1
3,724,674	-		PP_3290	0.26	-2.8
3,724,731	+		PP_3290	0.32	+0.5
3,724,732	-		PP_3290	0.32	-1.3
3,724,732	-		PP_3290	0.32	-0.2
3,724,984	+		PP_3290	0.60	+0.4
3,724,985	-		PP_3290	0.60	-0.2
3,725,019	+		PP_3290	0.63	+1.0
3,725,036	-		PP_3290	0.65	+0.6
3,725,036	-		PP_3290	0.65	-0.5