Strain Fitness in Pseudomonas putida KT2440 around PP_3251

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
3,684,639	+		PP_3250	0.73	-0.6
3,684,725	+		PP_3250	0.79	-2.9
3,684,726	-		PP_3250	0.80	-0.1
3,684,819	-		PP_3250	0.87	-0.1
3,685,003	-				+0.3
3,685,018	-				+0.4
3,685,022	-				-1.0
3,685,046	+				-0.7
3,685,090	-				-1.5
3,685,120	-				-2.9
3,685,120	-				-0.1
3,685,145	-				+0.5
3,685,145	-				-1.5
3,685,316	+				-1.0
3,685,317	-				+0.5
3,685,478	+		PP_5594	0.51	-0.7
3,685,479	-		PP_5594	0.52	+0.3
3,685,592	+				+0.5
3,685,613	+				+0.6
3,685,613	+				+0.2
3,685,665	+				-0.4
3,685,665	+				+0.9
3,685,796	+		PP_3251	0.15	-0.2
3,685,797	-		PP_3251	0.15	-0.2
3,685,850	+		PP_3251	0.19	-0.6
3,685,851	-		PP_3251	0.19	-1.0
3,685,851	-		PP_3251	0.19	-1.3
3,685,914	-		PP_3251	0.24	-0.4
3,685,939	+		PP_3251	0.26	+0.1
3,686,046	+		PP_3251	0.34	-1.7
3,686,078	-		PP_3251	0.36	-0.1
3,686,078	-		PP_3251	0.36	+0.1
3,686,106	+		PP_3251	0.39	-4.1
3,686,175	+		PP_3251	0.44	+0.4
3,686,175	+		PP_3251	0.44	+1.3
3,686,175	+		PP_3251	0.44	+2.2
3,686,176	-		PP_3251	0.44	+0.4
3,686,176	-		PP_3251	0.44	-2.0
3,686,188	-		PP_3251	0.45	-2.8
3,686,224	-		PP_3251	0.47	-0.7
3,686,224	-		PP_3251	0.47	+0.3
3,686,333	-		PP_3251	0.56	-1.6
3,686,361	+		PP_3251	0.58	+1.0
3,686,361	+		PP_3251	0.58	+1.4
3,686,378	-		PP_3251	0.59	-1.7
3,686,479	-		PP_3251	0.67	+0.2
3,686,479	-		PP_3251	0.67	-2.2
3,686,579	-		PP_3251	0.74	-3.5
3,686,696	-				+1.0
3,686,696	-		PP_3251	0.83	-1.5
3,686,696	-		PP_3251	0.83	-0.7
3,686,696	-		PP_3251	0.83	-0.2
3,686,783	+		PP_3251	0.89	-0.4
3,686,783	+		PP_3251	0.89	+0.1
3,686,783	+		PP_3251	0.89	-1.2
3,686,784	-		PP_3251	0.89	-1.3
3,686,784	-		PP_3251	0.89	-0.2
3,686,784	-		PP_3251	0.89	-0.5
3,686,784	-		PP_3251	0.89	+1.1
3,686,784	-		PP_3251	0.89	+1.5
3,686,784	-		PP_3251	0.89	-1.6
3,686,784	-		PP_3251	0.89	+1.6
3,686,785	+		PP_3251	0.89	-0.6
3,686,785	+		PP_3251	0.89	-1.5
3,686,786	-		PP_3251	0.90	+0.2
3,686,786	-		PP_3251	0.90	-0.8
3,686,786	-		PP_3251	0.90	+0.4
3,686,786	-		PP_3251	0.90	-2.8
3,686,790	+		PP_3251	0.90	+0.4
3,686,805	-				+0.3
3,686,883	+				+2.8
3,686,883	+				-0.5
3,686,883	+				+0.6
3,686,967	+				-0.7
3,687,008	-				-0.8
3,687,082	+		PP_3252	0.16	+1.2
3,687,085	-		PP_3252	0.17	-0.4
3,687,136	-		PP_3252	0.22	-0.4
3,687,136	-		PP_3252	0.22	-1.0
3,687,196	-		PP_3252	0.28	+0.0
3,687,449	+		PP_3252	0.55	+1.6
3,687,451	+		PP_3252	0.55	-0.1
3,687,451	+		PP_3252	0.55	+0.8
3,687,484	+		PP_3252	0.59	+0.1
3,687,520	+		PP_3252	0.62	+0.0
3,687,530	-		PP_3252	0.63	+0.2
3,687,560	+		PP_3252	0.67	+1.0
3,687,560	+				-1.0
3,687,561	-		PP_3252	0.67	+0.4
3,687,561	-		PP_3252	0.67	+0.1
3,687,587	+		PP_3252	0.69	-1.0
3,687,627	+		PP_3252	0.74	+0.9
3,687,627	+		PP_3252	0.74	-0.6
3,687,628	-		PP_3252	0.74	+0.0
3,687,628	-		PP_3252	0.74	+0.4
3,687,628	-		PP_3252	0.74	+1.4
3,687,631	+		PP_3252	0.74	+0.2
3,687,632	-		PP_3252	0.74	+0.1
3,687,632	-		PP_3252	0.74	-3.7
3,687,670	+		PP_3252	0.78	+0.0
3,687,681	+		PP_3252	0.79	-0.0
3,687,681	+		PP_3252	0.79	+0.1
3,687,681	+		PP_3252	0.79	-0.1
3,687,681	+		PP_3252	0.79	-0.5
3,687,682	-		PP_3252	0.79	+1.9
3,687,682	-		PP_3252	0.79	-0.7
3,687,682	-		PP_3252	0.79	+0.0
3,687,683	+		PP_3252	0.79	+0.4
3,687,683	+		PP_3252	0.79	+0.7
3,687,683	+		PP_3252	0.79	-0.2
3,687,683	+		PP_3252	0.79	-0.3
3,687,684	-		PP_3252	0.80	-2.6
3,687,684	-		PP_3252	0.80	-1.6
3,687,684	-		PP_3252	0.80	-1.8
3,687,684	-		PP_3252	0.80	+0.1
3,687,684	-		PP_3252	0.80	-0.8
3,687,684	-		PP_3252	0.80	+0.3
3,687,793	-				+1.7
3,687,793	-				+0.0
3,687,898	+				-0.6
3,687,920	+				+0.7
3,687,920	+				+0.0