Strain Fitness in Pseudomonas putida KT2440 around PP_3127

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
3,538,334	+		PP_5587	0.14	-1.1
3,538,346	+		PP_5587	0.15	-1.0
3,538,346	+		PP_5587	0.15	-0.4
3,538,346	+		PP_5587	0.15	-4.0
3,538,346	+		PP_5587	0.15	-0.5
3,538,347	-		PP_5587	0.15	+0.1
3,538,527	+		PP_5587	0.31	-0.4
3,538,528	-		PP_5587	0.31	-0.5
3,538,558	+		PP_5587	0.34	-1.1
3,538,559	-		PP_5587	0.34	-1.0
3,538,559	-		PP_5587	0.34	-0.3
3,538,577	+		PP_5587	0.36	-0.4
3,538,602	+		PP_5587	0.38	+0.1
3,538,603	-		PP_5587	0.38	+0.6
3,538,646	+		PP_5587	0.42	+0.5
3,538,646	+		PP_5587	0.42	+0.6
3,538,646	+		PP_5587	0.42	-2.1
3,538,668	+		PP_5587	0.44	+0.5
3,538,668	+		PP_5587	0.44	+1.5
3,538,668	+		PP_5587	0.44	-0.5
3,538,668	+		PP_5587	0.44	-2.9
3,538,668	+		PP_5587	0.44	+0.2
3,538,669	-		PP_5587	0.44	-0.0
3,538,669	-		PP_5587	0.44	+1.1
3,538,708	-		PP_5587	0.47	+0.5
3,538,740	+		PP_5587	0.50	-0.8
3,538,767	+		PP_5587	0.53	-0.4
3,538,767	+		PP_5587	0.53	+0.3
3,538,767	+		PP_5587	0.53	-0.7
3,538,767	+		PP_5587	0.53	+0.0
3,538,767	+				+0.9
3,538,768	-		PP_5587	0.53	-2.0
3,538,768	-		PP_5587	0.53	+0.0
3,538,768	-		PP_5587	0.53	-2.3
3,538,769	+		PP_5587	0.53	-0.6
3,538,769	+		PP_5587	0.53	+0.3
3,538,770	-		PP_5587	0.53	+0.0
3,538,770	-		PP_5587	0.53	+0.7
3,538,833	+		PP_5587	0.59	-0.4
3,538,834	-		PP_5587	0.59	+0.2
3,538,857	+		PP_5587	0.61	+0.6
3,538,959	+		PP_5587	0.70	+0.2
3,538,959	+		PP_5587	0.70	-1.0
3,538,960	-		PP_5587	0.70	+0.2
3,538,960	-		PP_5587	0.70	+0.1
3,539,064	+		PP_5587	0.79	-0.6
3,539,064	+		PP_5587	0.79	-0.1
3,539,065	-		PP_5587	0.79	+0.2
3,539,148	+		PP_5587	0.87	-0.5
3,539,182	-		PP_5587	0.90	-0.2
3,539,208	+				-1.5
3,539,208	+				-0.1
3,539,209	-				+1.6
3,539,234	-				-4.1
3,539,275	-				+0.3
3,539,347	+				+1.0
3,539,348	-				-0.7
3,539,348	-				+0.4
3,539,381	+				-0.4
3,539,382	-				-0.1
3,539,446	+				+0.2
3,539,446	+				+0.8
3,539,447	-				+0.6
3,539,447	-				-0.7
3,539,597	-		PP_3127	0.18	+0.0
3,539,597	-		PP_3127	0.18	-1.2
3,539,683	+		PP_3127	0.24	-0.7
3,539,684	-		PP_3127	0.24	-0.2
3,539,684	-		PP_3127	0.24	-0.8
3,539,684	-		PP_3127	0.24	+0.3
3,539,684	-		PP_3127	0.24	-3.8
3,539,751	-		PP_3127	0.28	-0.0
3,540,004	+		PP_3127	0.45	-0.4
3,540,005	-		PP_3127	0.45	-0.5
3,540,146	-		PP_3127	0.54	-0.8
3,540,167	-		PP_3127	0.55	+0.6
3,540,167	-		PP_3127	0.55	-2.3
3,540,309	+		PP_3127	0.65	+0.1
3,540,310	-		PP_3127	0.65	-2.4
3,540,362	-		PP_3127	0.68	-0.9
3,540,718	+				-1.1
3,540,718	+				+0.1
3,540,721	-				+0.2
3,540,798	+				-0.8
3,540,798	+				+1.1
3,540,827	-				-1.1
3,540,827	-				+0.5
3,540,827	-				+0.9
3,540,872	+				+0.1
3,540,873	-				+0.3
3,540,873	-				-0.5
3,540,875	-				+1.2
3,540,875	-				+0.4
3,540,875	-				-2.2
3,540,920	+				+0.9
3,540,920	+				-0.1
3,540,920	+				+0.9
3,540,921	-				+0.8
3,540,942	-				-0.1
3,541,005	+		PP_3128	0.14	+1.2
3,541,005	+		PP_3128	0.14	-1.7
3,541,006	-		PP_3128	0.15	-0.2
3,541,069	-		PP_3128	0.22	+0.6
3,541,112	+				+2.2
3,541,113	-		PP_3128	0.28	+1.8
3,541,113	-		PP_3128	0.28	-0.2
3,541,113	-		PP_3128	0.28	+0.3
3,541,151	+		PP_3128	0.33	+0.9
3,541,151	+		PP_3128	0.33	+1.5
3,541,151	+		PP_3128	0.33	+0.4
3,541,152	-		PP_3128	0.33	-1.0
3,541,220	+		PP_3128	0.41	-0.8
3,541,220	+		PP_3128	0.41	+0.3
3,541,221	-		PP_3128	0.41	-0.2
3,541,221	-		PP_3128	0.41	-0.1
3,541,221	-		PP_3128	0.41	+0.4
3,541,250	-		PP_3128	0.45	-0.3
3,541,290	+		PP_3128	0.50	+0.4
3,541,291	-		PP_3128	0.50	+0.7
3,541,291	-		PP_3128	0.50	+1.1
3,541,686	+				+0.9
3,541,686	+				-0.1
3,541,687	-				+1.0
3,541,690	-				-2.0
3,541,690	-				+0.3
3,541,707	+				+0.8
3,541,708	-				-1.3
3,541,745	+				+0.7
3,541,745	+				-0.2
3,541,745	+				-1.7
3,541,746	-				-0.0