Strain Fitness in Pseudomonas putida KT2440 around PP_2671

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
3,057,856	-		PP_5538	0.40	-0.1
3,057,856	-		PP_5538	0.40	+1.4
3,057,856	-		PP_5538	0.40	-1.9
3,057,998	-		PP_5538	0.52	+0.4
3,058,106	+		PP_5538	0.61	+1.0
3,058,106	+		PP_5538	0.61	+0.1
3,058,107	-				+0.9
3,058,346	+		PP_5538	0.81	-1.1
3,058,346	+		PP_5538	0.81	+0.4
3,058,347	-		PP_5538	0.81	-0.8
3,058,347	-		PP_5538	0.81	+1.1
3,058,347	-		PP_5538	0.81	-0.7
3,058,347	-		PP_5538	0.81	+0.7
3,058,462	-				+0.7
3,058,462	-				+1.1
3,058,462	-				-0.4
3,058,572	-				+0.9
3,058,601	+				+1.0
3,058,601	+				+0.9
3,058,601	+				-1.8
3,058,601	+				-2.5
3,058,601	+				+0.5
3,058,602	-				-0.1
3,058,627	-				+0.5
3,058,627	-				-2.0
3,058,659	+				-1.3
3,058,659	+				-1.3
3,058,659	+				+1.1
3,058,659	+				+1.9
3,058,659	+				+0.5
3,058,687	+				-3.1
3,058,688	-				-0.3
3,058,688	-				+0.3
3,058,774	+				-0.6
3,058,774	+				-0.6
3,058,775	-				+0.0
3,058,876	-		PP_2671	0.12	-0.9
3,059,411	+		PP_2671	0.54	-0.6
3,059,411	+		PP_2671	0.54	+0.1
3,059,411	+		PP_2671	0.54	-1.0
3,059,412	-		PP_2671	0.54	+0.6
3,059,451	+		PP_2671	0.57	-0.7
3,059,451	+		PP_2671	0.57	+0.6
3,059,452	-		PP_2671	0.57	-0.3
3,059,477	-		PP_2671	0.59	+0.9
3,059,477	-		PP_2671	0.59	+0.7
3,059,477	-		PP_2671	0.59	-0.2
3,059,477	-		PP_2671	0.59	+0.1
3,059,489	+		PP_2671	0.60	-1.8
3,059,489	+		PP_2671	0.60	+0.5
3,059,490	-		PP_2671	0.60	-0.9
3,059,593	-		PP_2671	0.68	-1.6
3,059,610	+		PP_2671	0.70	-1.1
3,059,610	+		PP_2671	0.70	-0.3
3,059,610	+		PP_2671	0.70	-0.1
3,059,610	+		PP_2671	0.70	-0.7
3,059,611	-		PP_2671	0.70	-0.6
3,059,884	+				-2.4
3,059,932	+				+1.6
3,059,975	+				-0.1
3,060,002	-				+0.3
3,060,002	-				+0.7
3,060,041	+				+0.4
3,060,293	+				+0.9
3,060,362	+		PP_2672	0.57	-0.2
3,060,362	+		PP_2672	0.57	+0.9
3,060,363	-		PP_2672	0.57	-1.0
3,060,363	-		PP_2672	0.57	+0.3
3,060,363	-		PP_2672	0.57	+0.6
3,060,459	+		PP_2672	0.72	-1.1
3,060,515	-		PP_2672	0.81	-0.1
3,060,691	+				+0.9