Strain Fitness in Pseudomonas putida KT2440 around PP_2625

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
3,000,334	+				-1.3
3,000,373	+				-0.9
3,000,373	+				+0.3
3,000,373	+				+0.6
3,000,374	-				-0.5
3,000,415	-				-0.6
3,000,563	+		PP_2624	0.14	+0.3
3,000,564	-		PP_2624	0.14	-1.4
3,000,564	-		PP_2624	0.14	-0.8
3,000,815	+		PP_2624	0.64	-1.3
3,000,815	+		PP_2624	0.64	+0.8
3,000,815	+		PP_2624	0.64	-1.7
3,000,816	-		PP_2624	0.64	+0.3
3,000,816	-				-1.1
3,001,051	-				+1.1
3,001,083	-				+0.4
3,001,200	+				+0.9
3,001,286	-				-0.9
3,001,338	+				-0.7
3,001,338	+				-1.0
3,001,338	+				-0.5
3,001,339	-				-0.9
3,001,340	+				-1.2
3,001,470	-		PP_2625	0.28	-0.7
3,001,658	+		PP_2625	0.55	-3.7
3,001,658	+		PP_2625	0.55	+2.1
3,001,658	+		PP_2625	0.55	-0.9
3,001,659	-		PP_2625	0.55	-0.0
3,001,659	-		PP_2625	0.55	+0.6
3,001,677	+		PP_2625	0.57	-3.6
3,001,677	+		PP_2625	0.57	-1.5
3,001,677	+		PP_2625	0.57	-1.1
3,001,678	-				+2.9
3,001,740	+		PP_2625	0.67	-1.0
3,001,741	-		PP_2625	0.67	-0.9
3,002,063	-				-1.8
3,002,063	-				-1.9
3,002,153	-		PP_2626	0.13	-1.9
3,002,388	+		PP_2626	0.29	-1.3
3,002,392	+		PP_2626	0.30	-1.9
3,002,392	+		PP_2626	0.30	+0.7
3,002,393	-		PP_2626	0.30	+0.9
3,002,457	-		PP_2626	0.34	+0.6
3,002,498	+		PP_2626	0.37	-2.9
3,002,506	+		PP_2626	0.37	-0.1
3,002,689	+		PP_2626	0.50	-0.1
3,002,773	-		PP_2626	0.56	-2.0
3,002,812	+		PP_2626	0.58	-0.7
3,002,813	-		PP_2626	0.58	+1.4