Strain Fitness in Pseudomonas putida KT2440 around PP_2350

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
2,679,398	+		PP_2349	0.12	+0.1
2,679,399	-		PP_2349	0.12	-0.7
2,679,451	-		PP_2349	0.17	+0.1
2,679,509	+		PP_2349	0.22	-0.4
2,679,509	+		PP_2349	0.22	+1.2
2,679,510	-		PP_2349	0.22	+1.5
2,679,753	-		PP_2349	0.43	+0.5
2,679,753	-		PP_2349	0.43	+0.4
2,679,753	-		PP_2349	0.43	-0.2
2,679,753	-		PP_2349	0.43	-0.1
2,680,024	+		PP_2349	0.66	-0.1
2,680,436	+				+0.6
2,680,436	+				+0.5
2,680,437	-				-2.4
2,680,437	-				-0.2
2,680,498	-		PP_2350	0.13	-0.5
2,680,566	+		PP_2350	0.21	-2.0
2,680,594	-		PP_2350	0.24	-2.6
2,680,722	+		PP_2350	0.39	-0.7
2,680,723	-		PP_2350	0.39	-0.4
2,680,723	-		PP_2350	0.39	-0.4
2,680,728	+		PP_2350	0.39	-0.2
2,680,729	-		PP_2350	0.39	-0.1
2,680,729	-		PP_2350	0.39	-1.4
2,680,729	-		PP_2350	0.39	+0.9
2,680,806	+		PP_2350	0.48	-2.1
2,680,818	+		PP_2350	0.50	-0.5
2,681,055	+		PP_2350	0.77	+0.9
2,681,056	-		PP_2350	0.77	+1.5
2,681,056	-		PP_2350	0.77	+0.4
2,681,233	+				-1.0
2,681,283	+				+0.6
2,681,283	+				+0.8
2,681,283	+				+0.1
2,681,283	+				-0.8
2,681,283	+				+0.5
2,681,284	-				+0.3
2,681,288	+				-0.8
2,681,289	-				+0.7
2,681,306	-				+0.4
2,681,314	+				-1.7
2,681,354	+				-0.0
2,681,355	-				-0.3
2,681,377	-				-0.9
2,681,377	-				+1.5
2,681,377	-				-1.1
2,681,387	-				-0.3
2,681,407	+				+0.1
2,681,408	-				+0.5
2,681,417	+				+0.4
2,681,441	+				-0.4
2,681,441	+				+0.1
2,681,441	+				+0.4
2,681,442	-				+0.7
2,681,453	+				+1.3
2,681,453	+				+0.8
2,681,453	+				+0.7
2,681,546	-				+0.3
2,681,597	+				-0.3
2,681,597	+				+0.6
2,681,655	-		PP_2351	0.12	+1.0
2,681,687	+		PP_2351	0.13	+1.1
2,681,687	+		PP_2351	0.13	-1.6
2,681,687	+		PP_2351	0.13	+1.1
2,681,688	-		PP_2351	0.13	+0.3
2,681,688	-		PP_2351	0.13	+0.0
2,681,693	+		PP_2351	0.14	-0.1
2,681,693	+		PP_2351	0.14	+0.6
2,681,694	-		PP_2351	0.14	-0.3
2,681,694	-		PP_2351	0.14	-2.3
2,681,777	+		PP_2351	0.18	+0.8
2,681,777	+		PP_2351	0.18	+0.3
2,681,777	+		PP_2351	0.18	+0.2
2,681,777	+		PP_2351	0.18	+1.0
2,681,777	+		PP_2351	0.18	-0.9
2,681,778	-		PP_2351	0.18	-1.1
2,681,778	-		PP_2351	0.18	+0.5
2,681,778	-		PP_2351	0.18	-1.4
2,681,778	-		PP_2351	0.18	-0.6
2,682,137	+		PP_2351	0.37	+0.8
2,682,137	+		PP_2351	0.37	-0.0
2,682,137	+		PP_2351	0.37	+0.0
2,682,138	-		PP_2351	0.37	+1.2
2,682,146	+		PP_2351	0.38	-1.0
2,682,146	+		PP_2351	0.38	+1.6
2,682,146	+		PP_2351	0.38	-0.6
2,682,146	+		PP_2351	0.38	+1.1
2,682,146	+		PP_2351	0.38	+0.8
2,682,146	+		PP_2351	0.38	+0.2
2,682,146	+		PP_2351	0.38	-1.2
2,682,146	+		PP_2351	0.38	+0.3
2,682,146	+		PP_2351	0.38	-0.1
2,682,146	+		PP_2351	0.38	+1.8
2,682,146	+		PP_2351	0.38	+0.7
2,682,147	-		PP_2351	0.38	+0.8
2,682,147	-		PP_2351	0.38	-0.8
2,682,147	-		PP_2351	0.38	-1.9
2,682,147	-		PP_2351	0.38	+1.4
2,682,147	-		PP_2351	0.38	+0.7
2,682,147	-		PP_2351	0.38	-0.0
2,682,147	-		PP_2351	0.38	+0.2
2,682,147	-		PP_2351	0.38	+0.6
2,682,147	-		PP_2351	0.38	+1.2
2,682,147	-		PP_2351	0.38	-1.1
2,682,148	+		PP_2351	0.38	+0.3
2,682,148	+		PP_2351	0.38	-0.1
2,682,148	+		PP_2351	0.38	-1.5
2,682,148	+		PP_2351	0.38	-0.9
2,682,232	+		PP_2351	0.42	+1.6
2,682,232	+		PP_2351	0.42	-0.2
2,682,232	+		PP_2351	0.42	+1.2
2,682,232	+		PP_2351	0.42	-0.0
2,682,232	+		PP_2351	0.42	+0.5
2,682,232	+		PP_2351	0.42	-0.8
2,682,233	-		PP_2351	0.42	+0.2
2,682,233	-		PP_2351	0.42	+0.5
2,682,233	-		PP_2351	0.42	-0.5
2,682,236	+		PP_2351	0.42	+0.6
2,682,236	+		PP_2351	0.42	+1.3
2,682,236	+		PP_2351	0.42	+0.6
2,682,236	+		PP_2351	0.42	-2.5
2,682,236	+		PP_2351	0.42	+0.3
2,682,236	+		PP_2351	0.42	+0.2
2,682,237	-		PP_2351	0.42	+0.7
2,682,237	-		PP_2351	0.42	+0.3
2,682,237	-		PP_2351	0.42	-0.9
2,682,237	-		PP_2351	0.42	+1.2