Strain Fitness in Pseudomonas putida KT2440 around PP_2304

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
2,632,908	+				+1.1
2,632,930	+				-0.4
2,632,930	+				+0.8
2,632,930	+				-0.0
2,632,931	-				-3.3
2,632,981	+				-0.4
2,633,040	+				-0.8
2,633,044	+				+1.4
2,633,044	+				+0.9
2,633,048	+				-1.4
2,633,048	+				+0.9
2,633,048	+				-1.8
2,633,355	+				-1.9
2,633,355	+				-0.4
2,633,355	+				-1.1
2,633,356	-				+0.9
2,633,356	-				-0.1
2,633,440	+				+1.5
2,633,517	+				-0.5
2,633,518	-				-1.9
2,633,655	+				-1.1
2,633,655	+				+0.9
2,633,655	+				-1.1
2,633,655	+				-2.3
2,634,178	+		PP_2304	0.34	-1.7
2,634,179	-		PP_2304	0.34	+0.9
2,634,179	-		PP_2304	0.34	-1.6
2,634,229	+		PP_2304	0.37	-1.9
2,634,229	+		PP_2304	0.37	-0.7
2,634,518	+		PP_2304	0.52	-1.3
2,634,518	+		PP_2304	0.52	-1.1
2,634,518	+		PP_2304	0.52	-1.1
2,634,519	-		PP_2304	0.52	-1.0
2,634,519	-		PP_2304	0.52	-2.8
2,634,519	-		PP_2304	0.52	+0.4
2,634,519	-		PP_2304	0.52	-1.0
2,634,547	+		PP_2304	0.54	-2.6
2,634,547	+		PP_2304	0.54	-1.3
2,634,547	+		PP_2304	0.54	-2.8
2,634,547	+		PP_2304	0.54	-0.8
2,634,547	+		PP_2304	0.54	-2.6
2,634,548	-		PP_2304	0.54	-0.1
2,634,548	-		PP_2304	0.54	+0.6
2,634,548	-		PP_2304	0.54	-3.3
2,634,548	-		PP_2304	0.54	-1.7
2,634,570	-		PP_2304	0.55	-1.4
2,634,706	+		PP_2304	0.62	-1.7
2,634,706	+		PP_2304	0.62	-1.3
2,634,707	-		PP_2304	0.62	-1.3
2,634,707	-		PP_2304	0.62	-2.4
2,634,742	+		PP_2304	0.64	-2.6
2,635,127	-		PP_2304	0.85	-0.6
2,635,127	-				+0.9
2,635,222	+		PP_2304	0.90	-2.8
2,635,222	+		PP_2304	0.90	-2.8
2,635,223	-				-0.9
2,635,223	-				-0.2
2,635,328	-				-0.4
2,635,405	+				-1.0
2,635,406	-				+0.5
2,635,408	+				-1.0
2,635,408	+				-1.8
2,635,409	-				+0.9
2,635,409	-				+0.3
2,635,409	-				-0.3
2,635,546	+				-0.2
2,635,547	-				+0.2
2,635,547	-				+0.4
2,635,547	-				+0.5
2,635,607	-				+0.0
2,635,638	+		PP_2305	0.11	+0.6
2,635,638	+		PP_2305	0.11	-0.1
2,635,638	+		PP_2305	0.11	+0.1
2,635,638	+		PP_2305	0.11	-0.4
2,635,638	+		PP_2305	0.11	+0.5
2,636,225	+		PP_2305	0.67	-0.2
2,636,254	-		PP_2305	0.69	-0.2