Strain Fitness in Pseudomonas putida KT2440 around PP_2000

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
2,266,717	+		PP_1998	0.75	+1.8
2,266,727	+		PP_1998	0.76	+0.3
2,266,727	+		PP_1998	0.76	-1.0
2,266,727	+		PP_1998	0.76	-0.5
2,266,728	-		PP_1998	0.76	+1.7
2,266,728	-		PP_1998	0.76	-0.2
2,266,728	-				+1.0
2,266,736	+		PP_1998	0.78	-0.7
2,266,736	+		PP_1998	0.78	-0.0
2,266,736	+		PP_1998	0.78	-1.0
2,266,736	+		PP_1998	0.78	+0.6
2,266,737	-		PP_1998	0.78	-1.0
2,266,737	-		PP_1998	0.78	-1.0
2,266,737	-		PP_1998	0.78	-1.3
2,266,738	+		PP_1998	0.78	+1.8
2,266,769	+		PP_1998	0.83	+0.4
2,266,770	-		PP_1998	0.83	-0.4
2,266,931	+				+0.5
2,267,084	+				-0.0
2,267,084	+				-2.3
2,267,232	+		PP_1999	0.28	+2.2
2,267,244	+		PP_1999	0.30	-0.2
2,267,244	+		PP_1999	0.30	-0.0
2,267,941	-		PP_2000	0.18	-2.0
2,268,364	-		PP_2000	0.46	-0.6
2,269,170	+				+1.3
2,269,333	+		PP_2001	0.11	+1.6
2,269,333	+		PP_2001	0.11	-0.3
2,269,334	-		PP_2001	0.11	+0.3
2,269,406	-		PP_2001	0.17	+0.8
2,269,477	-		PP_2001	0.23	+0.6
2,269,477	-		PP_2001	0.23	+0.8
2,269,591	+		PP_2001	0.32	-0.4
2,269,591	+		PP_2001	0.32	+0.5
2,269,591	+		PP_2001	0.32	-2.3
2,269,592	-		PP_2001	0.33	-0.6
2,269,592	-		PP_2001	0.33	+1.3
2,269,592	-		PP_2001	0.33	-0.1
2,269,592	-		PP_2001	0.33	+0.0
2,269,610	+		PP_2001	0.34	+0.3
2,269,611	-		PP_2001	0.34	-0.4
2,269,611	-		PP_2001	0.34	+0.4
2,269,621	+		PP_2001	0.35	+0.6
2,269,725	+		PP_2001	0.43	+0.2
2,269,726	-		PP_2001	0.44	-0.4
2,269,903	-		PP_2001	0.58	+0.6
2,270,010	+		PP_2001	0.67	+0.8
2,270,011	-		PP_2001	0.67	-0.2
2,270,011	-		PP_2001	0.67	+0.8
2,270,086	+		PP_2001	0.73	-1.0
2,270,087	-		PP_2001	0.73	+0.5