Strain Fitness in Pseudomonas putida KT2440 around PP_1759

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
1,960,146	+				-0.6
1,960,174	+				-0.6
1,960,174	+				-0.7
1,960,175	-				+1.0
1,960,208	-				+0.2
1,960,231	+				-2.3
1,960,232	-				-0.3
1,960,232	-				+0.8
1,960,232	-				-0.2
1,960,232	-				-1.6
1,960,232	-				-0.0
1,960,513	+		PP_1758	0.36	+0.2
1,960,513	+		PP_1758	0.36	+0.3
1,960,513	+		PP_1758	0.36	+1.3
1,960,513	+		PP_1758	0.36	-0.8
1,960,514	-		PP_1758	0.36	+0.4
1,960,514	-		PP_1758	0.36	-0.7
1,960,514	-		PP_1758	0.36	+1.6
1,960,514	-		PP_1758	0.36	-0.6
1,960,514	-		PP_1758	0.36	-2.8
1,960,514	-		PP_1758	0.36	+0.3
1,960,585	+		PP_1758	0.44	-1.3
1,960,585	+		PP_1758	0.44	-1.4
1,960,602	+		PP_1758	0.46	+0.0
1,960,603	-		PP_1758	0.46	+0.2
1,960,657	+		PP_1758	0.51	-0.9
1,960,658	-		PP_1758	0.52	-0.6
1,960,658	-		PP_1758	0.52	+0.4
1,960,744	+		PP_1758	0.61	+0.0
1,960,745	-		PP_1758	0.61	+0.4
1,960,745	-		PP_1758	0.61	+0.0
1,960,745	-		PP_1758	0.61	-1.4
1,960,745	-		PP_1758	0.61	-3.1
1,960,774	+		PP_1758	0.64	+0.7
1,960,775	-		PP_1758	0.64	-1.0
1,960,782	+		PP_1758	0.65	+0.5
1,960,801	+		PP_1758	0.67	+0.9
1,961,087	-				+0.6
1,961,089	+				+0.6
1,961,089	+				-1.2
1,961,090	-				-0.6
1,961,090	-				+0.0
1,961,131	+				-0.5
1,961,131	+				-0.9
1,961,131	+				-0.7
1,961,131	+				-1.6
1,961,131	+				+0.6
1,961,132	-				-1.0
1,961,284	+		PP_1759	0.23	-0.6
1,961,284	+		PP_1759	0.23	-1.5
1,961,284	+		PP_1759	0.23	-1.7
1,961,285	-		PP_1759	0.23	-1.6
1,961,285	-		PP_1759	0.23	-0.1
1,961,285	-		PP_1759	0.23	+0.2
1,961,464	+		PP_1759	0.53	-1.9
1,961,465	-		PP_1759	0.53	-1.6
1,961,465	-		PP_1759	0.53	-2.1
1,961,680	+		PP_1759	0.89	+0.2
1,961,748	+				+0.2
1,961,748	+				+0.6
1,961,783	+				+0.7
1,961,783	+				-2.6
1,961,784	-				+0.5
1,962,155	-		PP_1760	0.23	+0.5
1,962,170	+		PP_1760	0.24	-0.2
1,962,362	+		PP_1760	0.34	-0.5
1,962,497	+		PP_1760	0.41	+0.1
1,962,731	-		PP_1760	0.54	-0.6
1,962,740	+		PP_1760	0.55	+0.3
1,962,741	-		PP_1760	0.55	-0.4
1,962,741	-		PP_1760	0.55	+1.0