Strain Fitness in Pseudomonas putida KT2440 around PP_1564

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
1,757,658	+		PP_1563	0.42	-0.4
1,757,658	+		PP_1563	0.42	+0.3
1,757,659	-		PP_1563	0.42	+0.2
1,757,659	-		PP_1563	0.42	-2.5
1,757,659	-		PP_1563	0.42	-0.6
1,757,732	+		PP_1563	0.47	-0.0
1,757,733	-		PP_1563	0.47	-2.5
1,757,746	+		PP_1563	0.48	+1.2
1,757,746	+		PP_1563	0.48	-0.8
1,757,747	-		PP_1563	0.48	+0.2
1,758,005	-		PP_1563	0.63	-2.5
1,758,005	-		PP_1563	0.63	-0.2
1,758,103	+		PP_1563	0.69	-1.1
1,758,104	-		PP_1563	0.69	+0.1
1,758,104	-		PP_1563	0.69	-0.8
1,758,106	+		PP_1563	0.69	+0.1
1,758,106	+		PP_1563	0.69	+1.0
1,758,106	+		PP_1563	0.69	-0.7
1,758,106	+		PP_1563	0.69	-1.6
1,758,106	+				+1.1
1,758,106	+		PP_1563	0.69	-0.4
1,758,107	-		PP_1563	0.69	-1.9
1,758,107	-		PP_1563	0.69	-0.3
1,758,107	-		PP_1563	0.69	+0.6
1,758,176	+		PP_1563	0.73	+1.6
1,758,271	+		PP_1563	0.79	+0.0
1,758,271	+		PP_1563	0.79	+0.2
1,758,386	+		PP_1563	0.85	-0.7
1,758,386	+		PP_1563	0.85	-1.7
1,758,386	+		PP_1563	0.85	+1.1
1,758,387	-		PP_1563	0.86	+1.1
1,758,387	-		PP_1563	0.86	-0.8
1,758,387	-		PP_1563	0.86	-2.8
1,758,435	-		PP_1563	0.88	+1.0
1,758,491	-				+0.3
1,758,711	+		PP_1564	0.42	-0.6
1,758,711	+		PP_1564	0.42	-1.4
1,758,711	+		PP_1564	0.42	-0.8
1,758,711	+		PP_1564	0.42	-0.8
1,758,711	+		PP_1564	0.42	-0.8
1,758,711	+		PP_1564	0.42	-0.0
1,758,711	+		PP_1564	0.42	-1.1
1,758,712	-		PP_1564	0.42	-0.6
1,758,712	-		PP_1564	0.42	-0.2
1,758,712	-		PP_1564	0.42	-0.6
1,758,712	-		PP_1564	0.42	-1.0
1,758,928	+				-0.5
1,758,928	+				+0.1
1,758,928	+				-0.0
1,758,928	+				-0.6
1,758,929	-				+0.3
1,758,929	-				-0.4
1,758,929	-				-1.2
1,758,929	-				-0.3
1,758,929	-				+0.4
1,758,931	+				-0.8
1,758,931	+				+0.1
1,758,932	-				-0.9
1,758,932	-				-0.3
1,759,051	+		PP_1565	0.16	-0.1
1,759,051	+		PP_1565	0.16	+0.2
1,759,610	-		PP_1565	0.60	+1.1