Strain Fitness in Pseudomonas putida KT2440 around PP_1548

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
1,747,300	+				-0.2
1,747,456	+		PP_5473	0.76	+0.8
1,747,470	+		PP_5473	0.82	+1.0
1,747,577	+				+0.7
1,747,578	-				+0.5
1,747,578	-				-0.2
1,747,578	-				-0.6
1,747,578	-				-0.6
1,747,721	+				+0.1
1,747,721	+				-0.1
1,747,722	-				+1.1
1,747,771	+				-1.2
1,747,793	+				-0.1
1,747,803	-				-0.4
1,747,825	-				-1.2
1,747,825	-				+0.3
1,747,888	+				+0.4
1,747,889	-				-1.0
1,747,889	-				-0.2
1,747,919	-				+0.5
1,748,001	+				-1.0
1,748,001	+				-0.7
1,748,001	+				-0.1
1,748,002	-				-1.6
1,748,002	-				-0.1
1,748,002	-				+1.1
1,748,002	-				+1.5
1,748,002	-				+0.1
1,748,040	+				-1.2
1,748,041	-				+0.6
1,748,237	+				+0.1
1,748,237	+				+1.1
1,748,237	+				+0.5
1,748,237	+				+0.9
1,748,237	+				-0.9
1,748,238	-				-0.5
1,748,238	-				+0.1
1,748,238	-				+0.3
1,748,344	-		PP_1548	0.26	+0.1
1,748,565	-		PP_1548	0.76	-0.8
1,748,565	-		PP_1548	0.76	-2.7
1,748,782	+				+0.9
1,748,782	+				+2.1
1,748,782	+				+0.7
1,748,782	+				-0.2
1,748,783	-				-0.2
1,748,783	-				-0.4
1,748,855	-				+0.5
1,748,970	-				+0.1
1,749,025	+				-0.4
1,749,292	+				-1.0
1,749,318	-				-1.2
1,749,324	+				-3.7