Strain Fitness in Pseudomonas putida KT2440 around PP_1538

Experiment: Butanol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1535 and PP_1536 are separated by 14 nucleotidesPP_1536 and PP_1537 overlap by 4 nucleotidesPP_1537 and PP_5472 overlap by 4 nucleotidesPP_5472 and PP_1538 overlap by 4 nucleotidesPP_1538 and PP_1539 are separated by 83 nucleotidesPP_1539 and PP_1540 are separated by 13 nucleotides PP_1535: PP_1535 - putative Methyltransferase, at 1,739,823 to 1,740,287 _1535 PP_1536: PP_1536 - conserved protein of unknown function, at 1,740,302 to 1,740,685 _1536 PP_1537: PP_1537 - conserved protein of unknown function, at 1,740,682 to 1,740,909 _1537 PP_5472: PP_5472 - conserved exported protein of unknown function, at 1,740,906 to 1,741,163 _5472 PP_1538: PP_1538 - conserved protein of unknown function, at 1,741,160 to 1,741,912 _1538 PP_1539: PP_1539 - conserved protein of unknown function, at 1,741,996 to 1,742,862 _1539 PP_1540: PP_1540 - conserved protein of unknown function, at 1,742,876 to 1,743,172 _1540 Position (kb) 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1740.447 kb on + strand, within PP_1536at 1740.476 kb on + strand, within PP_1536at 1740.517 kb on - strand, within PP_1536at 1740.600 kb on - strand, within PP_1536at 1740.665 kb on + strandat 1740.734 kb on + strand, within PP_1537at 1740.734 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.799 kb on + strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.800 kb on - strand, within PP_1537at 1740.801 kb on + strand, within PP_1537at 1740.802 kb on - strand, within PP_1537at 1740.840 kb on + strand, within PP_1537at 1740.849 kb on + strand, within PP_1537at 1740.873 kb on - strand, within PP_1537at 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.916 kb on + strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.917 kb on - strandat 1740.957 kb on - strand, within PP_5472at 1740.957 kb on - strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.050 kb on + strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.051 kb on - strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.054 kb on + strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.055 kb on - strand, within PP_5472at 1741.063 kb on - strand, within PP_5472at 1741.308 kb on + strand, within PP_1538at 1741.308 kb on + strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.309 kb on - strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.311 kb on + strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.312 kb on - strand, within PP_1538at 1741.343 kb on + strand, within PP_1538at 1741.540 kb on - strand, within PP_1538at 1741.560 kb on + strand, within PP_1538at 1741.561 kb on - strand, within PP_1538at 1741.624 kb on + strand, within PP_1538at 1741.701 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.760 kb on + strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.761 kb on - strand, within PP_1538at 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.912 kb on + strandat 1741.913 kb on - strandat 1741.913 kb on - strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.947 kb on + strandat 1741.948 kb on - strandat 1742.050 kb on + strandat 1742.050 kb on + strandat 1742.050 kb on + strandat 1742.051 kb on - strandat 1742.091 kb on + strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.092 kb on - strand, within PP_1539at 1742.181 kb on + strand, within PP_1539at 1742.182 kb on - strand, within PP_1539at 1742.182 kb on - strand, within PP_1539at 1742.206 kb on + strand, within PP_1539at 1742.253 kb on + strand, within PP_1539at 1742.254 kb on - strand, within PP_1539at 1742.258 kb on + strand, within PP_1539at 1742.258 kb on + strand, within PP_1539at 1742.259 kb on - strand, within PP_1539at 1742.259 kb on - strand, within PP_1539at 1742.259 kb on - strand, within PP_1539at 1742.272 kb on - strand, within PP_1539at 1742.272 kb on - strand, within PP_1539at 1742.334 kb on + strand, within PP_1539at 1742.402 kb on + strand, within PP_1539at 1742.402 kb on + strand, within PP_1539at 1742.402 kb on + strand, within PP_1539at 1742.403 kb on - strand, within PP_1539at 1742.403 kb on - strand, within PP_1539at 1742.403 kb on - strand, within PP_1539at 1742.403 kb on - strand, within PP_1539at 1742.418 kb on + strand, within PP_1539at 1742.418 kb on + strand, within PP_1539at 1742.432 kb on - strand, within PP_1539at 1742.468 kb on + strand, within PP_1539at 1742.469 kb on - strand, within PP_1539at 1742.469 kb on - strand, within PP_1539at 1742.587 kb on - strand, within PP_1539at 1742.635 kb on - strand, within PP_1539at 1742.708 kb on + strand, within PP_1539at 1742.756 kb on + strand, within PP_1539at 1742.756 kb on + strand, within PP_1539at 1742.756 kb on + strand, within PP_1539at 1742.756 kb on + strand, within PP_1539at 1742.757 kb on - strand, within PP_1539at 1742.757 kb on - strand, within PP_1539at 1742.757 kb on - strand, within PP_1539at 1742.757 kb on - strand, within PP_1539at 1742.757 kb on - strand, within PP_1539at 1742.779 kb on - strandat 1742.805 kb on + strandat 1742.805 kb on + strandat 1742.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Butanol 0.6 vol%
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1,740,447 + PP_1536 0.38 +0.3
1,740,476 + PP_1536 0.45 -0.4
1,740,517 - PP_1536 0.56 -0.5
1,740,600 - PP_1536 0.78 -0.1
1,740,665 + -2.9
1,740,734 + PP_1537 0.23 -0.8
1,740,734 + PP_1537 0.23 -2.6
1,740,799 + PP_1537 0.51 +0.4
1,740,799 + PP_1537 0.51 -0.0
1,740,799 + PP_1537 0.51 +0.2
1,740,799 + PP_1537 0.51 +0.6
1,740,799 + PP_1537 0.51 +1.2
1,740,800 - PP_1537 0.52 -2.3
1,740,800 - PP_1537 0.52 -0.7
1,740,801 + PP_1537 0.52 +0.1
1,740,802 - PP_1537 0.53 -0.2
1,740,840 + PP_1537 0.69 -0.1
1,740,849 + PP_1537 0.73 +0.4
1,740,873 - PP_1537 0.84 -1.1
1,740,916 + +0.7
1,740,916 + -0.0
1,740,916 + -0.8
1,740,916 + +0.2
1,740,916 + +0.9
1,740,916 + +1.5
1,740,917 - -1.1
1,740,917 - -0.3
1,740,917 - +0.2
1,740,917 - -1.6
1,740,957 - PP_5472 0.20 +0.1
1,740,957 - PP_5472 0.20 -0.5
1,741,050 + PP_5472 0.56 -1.6
1,741,050 + PP_5472 0.56 +0.4
1,741,050 + PP_5472 0.56 -1.4
1,741,051 - PP_5472 0.56 +0.5
1,741,051 - PP_5472 0.56 +0.3
1,741,051 - PP_5472 0.56 +0.4
1,741,054 + PP_5472 0.57 -0.6
1,741,054 + PP_5472 0.57 +0.1
1,741,055 - PP_5472 0.58 -0.3
1,741,055 - PP_5472 0.58 +1.7
1,741,063 - PP_5472 0.61 -0.7
1,741,308 + PP_1538 0.20 +0.4
1,741,308 + PP_1538 0.20 +0.2
1,741,309 - PP_1538 0.20 -0.1
1,741,309 - PP_1538 0.20 -1.8
1,741,309 - PP_1538 0.20 +0.2
1,741,309 - PP_1538 0.20 +0.0
1,741,311 + PP_1538 0.20 -0.0
1,741,311 + PP_1538 0.20 -1.2
1,741,312 - PP_1538 0.20 +0.2
1,741,312 - PP_1538 0.20 -1.0
1,741,343 + PP_1538 0.24 -1.1
1,741,540 - PP_1538 0.50 +0.7
1,741,560 + PP_1538 0.53 -0.8
1,741,561 - PP_1538 0.53 -0.3
1,741,624 + PP_1538 0.62 +0.1
1,741,701 + PP_1538 0.72 +2.2
1,741,760 + PP_1538 0.80 -1.4
1,741,760 + PP_1538 0.80 -1.8
1,741,760 + PP_1538 0.80 -0.9
1,741,761 - PP_1538 0.80 -1.2
1,741,761 - PP_1538 0.80 -0.1
1,741,761 - PP_1538 0.80 -0.8
1,741,761 - PP_1538 0.80 -1.7
1,741,761 - PP_1538 0.80 -0.3
1,741,761 - PP_1538 0.80 +1.4
1,741,912 + +0.2
1,741,912 + +0.3
1,741,912 + +0.6
1,741,912 + -1.3
1,741,913 - -0.3
1,741,913 - -1.0
1,741,947 + +0.1
1,741,947 + -0.3
1,741,947 + +1.1
1,741,947 + -0.0
1,741,948 - +0.3
1,742,050 + +1.3
1,742,050 + -2.1
1,742,050 + +1.0
1,742,051 - -2.8
1,742,091 + PP_1539 0.11 +0.2
1,742,092 - PP_1539 0.11 +0.8
1,742,092 - PP_1539 0.11 -0.9
1,742,092 - PP_1539 0.11 -0.1
1,742,092 - PP_1539 0.11 +1.0
1,742,181 + PP_1539 0.21 +0.4
1,742,182 - PP_1539 0.21 +0.8
1,742,182 - PP_1539 0.21 -1.1
1,742,206 + PP_1539 0.24 +0.7
1,742,253 + PP_1539 0.30 +0.3
1,742,254 - PP_1539 0.30 -0.5
1,742,258 + PP_1539 0.30 +0.1
1,742,258 + PP_1539 0.30 +0.3
1,742,259 - PP_1539 0.30 -0.2
1,742,259 - PP_1539 0.30 +0.1
1,742,259 - PP_1539 0.30 -0.7
1,742,272 - PP_1539 0.32 -0.9
1,742,272 - PP_1539 0.32 +1.4
1,742,334 + PP_1539 0.39 +0.1
1,742,402 + PP_1539 0.47 +0.2
1,742,402 + PP_1539 0.47 +0.4
1,742,402 + PP_1539 0.47 -0.5
1,742,403 - PP_1539 0.47 -0.9
1,742,403 - PP_1539 0.47 -1.0
1,742,403 - PP_1539 0.47 +1.9
1,742,403 - PP_1539 0.47 +0.1
1,742,418 + PP_1539 0.49 +0.2
1,742,418 + PP_1539 0.49 +0.2
1,742,432 - PP_1539 0.50 +0.1
1,742,468 + PP_1539 0.54 +0.2
1,742,469 - PP_1539 0.55 +0.6
1,742,469 - PP_1539 0.55 -0.6
1,742,587 - PP_1539 0.68 +0.4
1,742,635 - PP_1539 0.74 -2.4
1,742,708 + PP_1539 0.82 +0.8
1,742,756 + PP_1539 0.88 +1.0
1,742,756 + PP_1539 0.88 +0.1
1,742,756 + PP_1539 0.88 +0.2
1,742,756 + PP_1539 0.88 +2.2
1,742,757 - PP_1539 0.88 -0.1
1,742,757 - PP_1539 0.88 +0.8
1,742,757 - PP_1539 0.88 +0.5
1,742,757 - PP_1539 0.88 -0.8
1,742,757 - PP_1539 0.88 -0.9
1,742,779 - +0.8
1,742,805 + +0.5
1,742,805 + -2.8
1,742,806 - +1.0

Or see this region's nucleotide sequence