Experiment: Butanol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1232 and PP_1233 are separated by 122 nucleotides PP_1233 and PP_1234 are separated by 20 nucleotides
PP_1232: PP_1232 - conserved exported protein of unknown function, at 1,410,498 to 1,411,934
_1232
PP_1233: PP_1233 - sulfurtransferase, at 1,412,057 to 1,412,296
_1233
PP_1234: PP_1234 - putative permease, at 1,412,317 to 1,413,387
_1234
Position (kb)
1412
1413 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1411.105 kb on + strand, within PP_1232 at 1411.105 kb on + strand, within PP_1232 at 1411.106 kb on - strand, within PP_1232 at 1411.106 kb on - strand, within PP_1232 at 1411.139 kb on - strand, within PP_1232 at 1411.187 kb on + strand, within PP_1232 at 1411.202 kb on + strand, within PP_1232 at 1411.202 kb on + strand, within PP_1232 at 1411.563 kb on + strand, within PP_1232 at 1411.573 kb on + strand, within PP_1232 at 1411.720 kb on + strand, within PP_1232 at 1411.738 kb on + strand, within PP_1232 at 1411.738 kb on + strand, within PP_1232 at 1411.739 kb on - strand, within PP_1232 at 1411.739 kb on - strand, within PP_1232 at 1411.926 kb on + strand at 1411.926 kb on + strand at 1411.926 kb on + strand at 1411.927 kb on - strand at 1411.927 kb on - strand at 1411.961 kb on + strand at 1411.961 kb on + strand at 1411.962 kb on - strand at 1411.965 kb on + strand at 1411.965 kb on + strand at 1411.966 kb on - strand at 1411.966 kb on - strand at 1411.966 kb on - strand at 1411.966 kb on - strand at 1411.966 kb on - strand at 1411.966 kb on - strand at 1411.970 kb on + strand at 1412.007 kb on + strand at 1412.062 kb on + strand at 1412.063 kb on - strand at 1412.176 kb on + strand, within PP_1233 at 1412.236 kb on + strand, within PP_1233 at 1412.270 kb on + strand, within PP_1233 at 1412.270 kb on + strand, within PP_1233 at 1412.270 kb on + strand, within PP_1233 at 1412.271 kb on - strand, within PP_1233 at 1412.272 kb on + strand, within PP_1233 at 1412.272 kb on + strand, within PP_1233 at 1412.272 kb on + strand, within PP_1233 at 1412.272 kb on + strand, within PP_1233 at 1412.272 kb on + strand, within PP_1233 at 1412.273 kb on - strand at 1412.273 kb on - strand at 1412.273 kb on - strand at 1412.273 kb on - strand at 1412.273 kb on - strand at 1412.276 kb on + strand at 1412.276 kb on + strand at 1412.276 kb on + strand at 1412.276 kb on + strand at 1412.276 kb on + strand at 1412.277 kb on - strand at 1412.350 kb on + strand at 1412.351 kb on - strand at 1412.351 kb on - strand at 1412.507 kb on + strand, within PP_1234 at 1412.511 kb on + strand, within PP_1234 at 1412.705 kb on + strand, within PP_1234 at 1412.705 kb on + strand, within PP_1234 at 1412.706 kb on - strand, within PP_1234 at 1412.706 kb on - strand, within PP_1234 at 1412.809 kb on + strand, within PP_1234 at 1412.809 kb on + strand, within PP_1234 at 1412.810 kb on - strand, within PP_1234 at 1412.885 kb on - strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.950 kb on + strand, within PP_1234 at 1412.951 kb on - strand, within PP_1234 at 1412.998 kb on + strand, within PP_1234 at 1412.998 kb on + strand, within PP_1234 at 1412.998 kb on + strand, within PP_1234 at 1412.998 kb on + strand, within PP_1234 at 1412.999 kb on - strand, within PP_1234 at 1412.999 kb on - strand, within PP_1234 at 1412.999 kb on - strand, within PP_1234 at 1413.029 kb on - strand, within PP_1234 at 1413.029 kb on - strand, within PP_1234 at 1413.038 kb on + strand, within PP_1234 at 1413.039 kb on - strand, within PP_1234 at 1413.039 kb on - strand, within PP_1234 at 1413.076 kb on + strand, within PP_1234 at 1413.076 kb on + strand, within PP_1234 at 1413.076 kb on + strand, within PP_1234 at 1413.076 kb on + strand, within PP_1234 at 1413.077 kb on - strand, within PP_1234 at 1413.077 kb on - strand, within PP_1234 at 1413.154 kb on + strand, within PP_1234 at 1413.154 kb on + strand, within PP_1234 at 1413.154 kb on + strand, within PP_1234 at 1413.169 kb on + strand, within PP_1234 at 1413.252 kb on + strand, within PP_1234 at 1413.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Butanol 0.6 vol% remove 1,411,105 + PP_1232 0.42 +0.2 1,411,105 + PP_1232 0.42 +0.6 1,411,106 - PP_1232 0.42 +0.9 1,411,106 - PP_1232 0.42 -0.9 1,411,139 - PP_1232 0.45 +0.8 1,411,187 + PP_1232 0.48 -1.0 1,411,202 + PP_1232 0.49 +3.5 1,411,202 + PP_1232 0.49 -0.4 1,411,563 + PP_1232 0.74 +0.3 1,411,573 + PP_1232 0.75 +0.7 1,411,720 + PP_1232 0.85 -0.1 1,411,738 + PP_1232 0.86 -0.8 1,411,738 + PP_1232 0.86 -1.6 1,411,739 - PP_1232 0.86 +1.4 1,411,739 - PP_1232 0.86 +0.9 1,411,926 + +0.2 1,411,926 + -1.6 1,411,926 + -1.1 1,411,927 - +0.6 1,411,927 - +0.5 1,411,961 + -1.3 1,411,961 + +0.5 1,411,962 - -0.6 1,411,965 + -0.1 1,411,965 + -0.8 1,411,966 - +0.8 1,411,966 - +0.7 1,411,966 - -0.2 1,411,966 - +1.1 1,411,966 - +0.7 1,411,966 - +0.5 1,411,970 + -0.2 1,412,007 + +0.5 1,412,062 + -2.1 1,412,063 - -0.4 1,412,176 + PP_1233 0.50 -1.0 1,412,236 + PP_1233 0.75 -1.2 1,412,270 + PP_1233 0.89 -4.3 1,412,270 + PP_1233 0.89 +1.0 1,412,270 + PP_1233 0.89 +2.5 1,412,271 - PP_1233 0.89 +0.1 1,412,272 + PP_1233 0.90 -0.9 1,412,272 + PP_1233 0.90 -1.2 1,412,272 + PP_1233 0.90 -1.1 1,412,272 + PP_1233 0.90 -2.1 1,412,272 + PP_1233 0.90 -1.8 1,412,273 - +0.1 1,412,273 - -0.3 1,412,273 - -0.4 1,412,273 - -1.6 1,412,273 - +0.2 1,412,276 + -0.6 1,412,276 + -1.8 1,412,276 + -0.2 1,412,276 + +0.7 1,412,276 + -0.1 1,412,277 - +1.5 1,412,350 + -1.9 1,412,351 - -1.6 1,412,351 - +1.3 1,412,507 + PP_1234 0.18 +1.7 1,412,511 + PP_1234 0.18 +0.2 1,412,705 + PP_1234 0.36 +0.1 1,412,705 + PP_1234 0.36 +0.8 1,412,706 - PP_1234 0.36 +0.5 1,412,706 - PP_1234 0.36 +0.5 1,412,809 + PP_1234 0.46 +0.2 1,412,809 + PP_1234 0.46 +0.4 1,412,810 - PP_1234 0.46 +0.9 1,412,885 - PP_1234 0.53 +1.4 1,412,950 + PP_1234 0.59 +2.2 1,412,950 + PP_1234 0.59 +0.9 1,412,950 + PP_1234 0.59 +1.8 1,412,950 + PP_1234 0.59 +0.0 1,412,950 + PP_1234 0.59 -0.1 1,412,950 + PP_1234 0.59 +1.4 1,412,951 - PP_1234 0.59 +0.1 1,412,998 + PP_1234 0.64 +1.2 1,412,998 + PP_1234 0.64 +1.8 1,412,998 + PP_1234 0.64 +0.3 1,412,998 + PP_1234 0.64 +0.3 1,412,999 - PP_1234 0.64 +1.1 1,412,999 - PP_1234 0.64 +2.1 1,412,999 - PP_1234 0.64 +1.2 1,413,029 - PP_1234 0.66 +1.8 1,413,029 - PP_1234 0.66 +0.8 1,413,038 + PP_1234 0.67 +1.5 1,413,039 - PP_1234 0.67 +0.6 1,413,039 - PP_1234 0.67 -0.9 1,413,076 + PP_1234 0.71 +0.8 1,413,076 + PP_1234 0.71 +0.7 1,413,076 + PP_1234 0.71 +0.6 1,413,076 + PP_1234 0.71 +1.0 1,413,077 - PP_1234 0.71 +1.5 1,413,077 - PP_1234 0.71 +1.0 1,413,154 + PP_1234 0.78 -0.8 1,413,154 + PP_1234 0.78 +1.5 1,413,154 + PP_1234 0.78 +0.7 1,413,169 + PP_1234 0.80 +2.2 1,413,252 + PP_1234 0.87 +0.7 1,413,281 + +1.2
Or see this region's nucleotide sequence