Strain Fitness in Pseudomonas putida KT2440 around PP_1207

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
1,386,320	+		PP_1206	0.89	-2.9
1,386,321	-		PP_1206	0.89	+0.1
1,386,321	-		PP_1206	0.89	+1.0
1,386,321	-		PP_1206	0.89	-0.7
1,386,509	+				+0.1
1,386,509	+				-0.5
1,386,513	+				+0.8
1,386,513	+				-1.0
1,386,513	+				-0.3
1,386,514	-				-0.0
1,386,514	-				+0.7
1,386,514	-				+0.4
1,386,514	-				-0.4
1,386,515	+				-1.0
1,386,516	-				+0.1
1,386,536	+				-1.2
1,386,537	-				-1.4
1,386,553	-				+0.2
1,386,584	+				-0.3
1,386,584	+				-0.7
1,386,585	-				+0.3
1,386,585	-				+0.2
1,386,586	+				-2.2
1,386,586	+				-1.2
1,386,624	+				+0.8
1,386,667	+				+0.8
1,386,668	-				+0.1
1,386,695	+				-1.0
1,386,707	-				-1.1
1,386,769	+				+1.1
1,386,769	+				+0.8
1,386,769	+				-1.3
1,386,770	-				-0.2
1,386,770	-				-0.7
1,386,961	+				-1.3
1,387,089	-				+0.8
1,387,089	-				+0.6
1,387,125	+				-0.8
1,387,125	+				+1.3
1,387,125	+				-0.8
1,387,126	-				-0.1
1,387,141	+				-0.1
1,387,141	+				-0.7
1,387,141	+				-2.0
1,387,141	+				-0.7
1,387,142	-				-1.9
1,387,142	-				+1.2
1,387,142	-				-0.1
1,387,142	-				+0.7
1,387,237	+		PP_1207	0.21	-2.4
1,387,238	-		PP_1207	0.22	-1.0
1,387,238	-		PP_1207	0.22	-0.1
1,387,238	-		PP_1207	0.22	-0.3
1,387,360	+		PP_1207	0.51	-2.7
1,387,360	+		PP_1207	0.51	-2.3
1,387,360	+				+1.3
1,387,361	-		PP_1207	0.51	+0.3
1,387,361	-		PP_1207	0.51	+0.5
1,387,387	-		PP_1207	0.57	-0.5
1,387,467	-		PP_1207	0.76	-1.0
1,387,539	-				+1.5
1,387,627	+		PP_1208	0.29	+0.8
1,387,733	+		PP_1208	0.80	+0.4
1,387,733	+		PP_1208	0.80	-1.0
1,387,769	+				-0.7
1,387,817	+				-0.2
1,387,817	+				+0.6
1,387,817	+				-1.0
1,387,818	-				-0.0
1,387,818	-				-1.0
1,387,818	-				+1.0
1,387,818	-				-0.1
1,387,872	+				-0.7
1,388,381	-		PP_1209	0.82	+0.7
1,388,434	-				+1.3
1,388,554	-				+0.2
1,388,554	-				-2.6
1,388,554	-				+1.4
1,388,554	-				-1.9
1,388,554	-				-0.4
1,388,555	+				+1.3
1,388,556	-				+0.1
1,388,556	-				-1.3